ReachKBConstants

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. val AllKeysStopSuffixes: Seq[String]

   

   The set of words to remove from all keys to create a lookup key.

5. val AuxBioProcessFilename: String

   

   Filename of the auxiliary biological processes file.

6. val AuxCellLocationFilename: String

   

   Filename of the auxiliary cellular location file.

7. val AuxChemicalFilename: String

   

   Filename of the auxiliary small molecule (chemical) file.

8. val AuxMetaboliteFilename: String

   

   Filename of the auxiliary small molecule (metabolite) file.

9. val AuxProteinFamilyFilename: String

   

   Filename of the auxiliary protein family file.

10. val AuxProteinFilename: String

    

    Filename of the auxiliary protein file.

11. val AuxTissueTypeFilename: String

    

    Filename of the auxiliary protein file.

12. val ContextCellLineFilename: String

    

    Filename of the contenxt cell lines file

13. val ContextCellTypeFilename: String

    

    Filename of the context cell types file

14. val ContextOrganFilename: String

    

    Filename of the context organs file

15. val ContextSpeciesFilename: String

    

    Filename of the context species file

16. val FamilyStopSuffixes: Seq[String]

    

    The set of words to remove from a key to create a protein family lookup key.

17. val GendCellLocationFilename: String

    

    Filename of the cellular location file generated by the entity checker.

18. val GendCellLocationPrefix: String

    

    Prefix string for cellular location IDs generated by the entity checker.

19. val GendChemicalFilename: String

    

    Filename of the small molecule file generated by the entity checker.

20. val GendChemicalPrefix: String

    

    Prefix string for small molecule IDs generated by the entity checker.

21. val GendProteinFilename: String

    

    Filename of the protein/family file generated by the entity checker.

22. val GendProteinPrefix: String

    

    Prefix string for protein/family IDs generated by the entity checker.

23. val KBDirFilePath: String

    

    File Path to the directory which holds the entity knowledge bases.

24. val KBDirResourcePath: String

    

    Resource Path to the directory which holds the entity knowledge bases.

25. val KeyCharactersToRemove: Set[Char]

    

    The set of characters to remove from the text to create a lookup key.

26. val ManualCellLocationFilename: String

    

    Filename of the manually maintained cellular location file.

27. val ManualChemicalFilename: String

    

    Filename of the manually maintained small molecule file.

28. val ManualProteinFamilyFilename: String

    

    Filename of the manually maintained protein family file.

29. val ManualProteinFilename: String

    

    Filename of the manually maintained protein file.

30. val ProteinStopSuffixes: Seq[String]

    

    The set of words to remove from a key to create a protein lookup key.

31. val StaticCellLocation2Filename: String

    

    Filename of the alternate static cellular location file.

32. val StaticCellLocationFilename: String

    

    Filename of the static cellular location file.

33. val StaticChemicalFilename: String

    

    Filename of the static small molecule (chemical) file.

34. val StaticMetaboliteFilename: String

    

    Filename of the static small molecule (chemical) file.

35. val StaticProteinFamilyFilename: String

    

    Filename of the static protein family file.

36. val StaticProteinFilename: String

    

    Filename of the static protein file.

37. val StaticTissueTypeFilename: String

    

    Filename of the static tissue type file.

38. final def asInstanceOf[T0]: T0

    

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39. def clone(): AnyRef

    

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40. final def eq(arg0: AnyRef): Boolean

    

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41. def equals(arg0: Any): Boolean

    

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42. def finalize(): Unit

    

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43. final def getClass(): Class[_]

    

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44. def hashCode(): Int

    

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45. final def isInstanceOf[T0]: Boolean

    

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46. final def ne(arg0: AnyRef): Boolean

    

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47. final def notify(): Unit

    

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48. final def notifyAll(): Unit

    

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49. final def synchronized[T0](arg0: ⇒ T0): T0

    

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50. def toString(): String

    

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51. final def wait(): Unit

    

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52. final def wait(arg0: Long, arg1: Int): Unit

    

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53. final def wait(arg0: Long): Unit

    

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