ReachGrounder

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. def SpeciesNameSet(xs: String*): Set[String]

   

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   Speciated

5. def apply(mentions: Seq[BioMention]): Seq[BioMention]

   

   Select and apply best grounding choice to a sequence of bio mentions.

6. final def asInstanceOf[T0]: T0

   

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7. def clone(): AnyRef

   

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   protected[java.lang]

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   @throws( ... )

8. val config: Config

   

9. def containsHumanNsId(nsIdSeq: Seq[String]): Boolean

   

   Tell whether the given sequence of namespace/ID strings contains a human nsId.

   Tell whether the given sequence of namespace/ID strings contains a human nsId.

   Definition Classes

   Speciated

10. def containsHumanSpecies(speciesSeq: Seq[String]): Boolean

    

    Tell whether the given sequence of species strings contain a human species label.

    Tell whether the given sequence of species strings contain a human species label.

    Definition Classes

    Speciated

11. final def eq(arg0: AnyRef): Boolean

    

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12. def equals(arg0: Any): Boolean

    

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13. def finalize(): Unit

    

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    protected[java.lang]

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    @throws( classOf[java.lang.Throwable] )

14. final def getClass(): Class[_]

    

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15. def getSpeciesContext(mention: BioMention): Seq[String]

    

    Return a possibly empty sequence of NS/ID strings for the given mentions.

16. def groundArguments(parent: BioMention): Unit

    

    Recursively process arguments of given parent mention, possibly setting new context environment.

17. def groundAsHuman(mention: BioTextBoundMention): Unit

    

    Prioritize the Grounding of the given mention as human.

    Prioritize the Grounding of the given mention as human. NB: Mention must be grounded and have more than one candidate.

18. def groundBySpecies(mention: BioTextBoundMention, context: Seq[String]): Unit

    

    Prioritize the grounding for one of the given species NS/IDs strings.

    Prioritize the grounding for one of the given species NS/IDs strings. NB: Mention must be grounded and have more than one candidate.

19. def groundMention(mention: BioMention, context: Seq[String]): Unit

    

    Dispatch the given bio mention for grounding, based on candidates and given species context.

20. def hasHumanNsId(nsId: String): Boolean

    

    Tell whether the given namespace/ID string is an ID for humans or not.

    Tell whether the given namespace/ID string is an ID for humans or not.

    Definition Classes

    Speciated

21. def hashCode(): Int

    

    Definition Classes

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22. def isHumanSpecies(species: String): Boolean

    

    Tell whether the given species string is label for humans or not.

    Tell whether the given species string is label for humans or not.

    Definition Classes

    Speciated

23. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

24. def isMemberOf(species: String, speciesSet: SpeciesNameSet): Boolean

    

    Tell whether the given species string is a member of the given set of species.

    Tell whether the given species string is a member of the given set of species.

    Definition Classes

    Speciated

25. val mentionMgr: MentionManager

    

26. final def ne(arg0: AnyRef): Boolean

    

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27. final def notify(): Unit

    

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28. final def notifyAll(): Unit

    

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29. val overrideSpecies: Boolean

    

30. final def synchronized[T0](arg0: ⇒ T0): T0

    

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31. def toString(): String

    

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32. final def wait(): Unit

    

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    @throws( ... )

33. final def wait(arg0: Long, arg1: Int): Unit

    

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    @throws( ... )

34. final def wait(arg0: Long): Unit

    

    Definition Classes

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    @throws( ... )