TOTAL_HITS
NxmlSearcher
TextBound
brat
Token
apis
TokenInterval
BratUtils
TrailingMutationPat
ReachKBKeyTransforms
TrainAssemblyRelationClassifier
classifier
TrainingInstance
corpus
TsvIMKBFactory
ReachIMKBMentionLookups
grounding
tag
Token
tbmSieves
Coref
templateReactionRegulations
Fragmenter
templateReactions
Fragmenter
terminalsConstraint
FeatureExtractor
test
DatasetStratifiedFold
testMentions
RunAnnotationEval
text
AssemblyAnnotation
E
TrainingInstance
RulerResults
Normalization
TextBound
KBEntry
KBResolution
ContextGrounding
Anaphoric
Mutant
FriesEntry
NxmlEntry
textBoundLUT
IdTracker
textColumn
ReachCSV
theKB
InMemoryKB
ReverseLookupKB
themeArgs
MentionOps
threadLimit
AssemblyCLI
PaperReader
ReachCLI
tissueSeq
ReachEntityLookup
toBioMention
MentionOps
toCSV
PandasOutput
toCorefMention
MentionOps
toFriesEntries
DSVParser
toJSON
Corpus
JsonOutputter
FriesOutput
IndexCardOutput
toResolutions
InMemoryKB
toShellRow
Row
toSingletons
Anaphoric
CorefEventMention
CorefRelationMention
CorefTextBoundMention
toString
IMKBMetaInfo
KBEntry
KBResolution
PTM
FriesEntry
NxmlDoc
NxmlEntry
toTSVrow
Row
tokensLinkingMentions
FeatureExtractor
totalSpan
TextBound
BratUtils
tp
Performance
Performance
trackMention
AssemblyManager
trackMentions
AssemblyManager
DeduplicationSieves
trackedMentions
AssemblyManager
train
AssemblyRelationClassifier
DatasetStratifiedFold
trainingInstances
BuildCorpus
transform
PreprocessNxml
transportWithBiochemicalReactions
Fragmenter
transports
Fragmenter
trigger
E
Event
trim
DSVParser
tsvIMKBFactory
ReachIMKBLookups
tsvRLKBFactory
ReachRLKBLookups
tsvRowToFields
ReachKBUtils
tsvValidateFields
ReachKBUtils
txtDir
RunNxml2Fries