Class

org.bdgenomics.adam.rdd.features

GeneRDD

Related Doc: package features

Permalink

case class GeneRDD(rdd: RDD[Gene], sequences: SequenceDictionary) extends GenomicRDD[Gene, GeneRDD] with Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, GenomicRDD[Gene, GeneRDD], AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. GeneRDD
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. GenomicRDD
  7. AnyRef
  8. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new GeneRDD(rdd: RDD[Gene], sequences: SequenceDictionary)

    Permalink

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any

  5. def broadcastRegionJoin[X, Y <: GenomicRDD[X, Y], Z <: GenomicRDD[(Gene, X), Z]](genomicRdd: GenomicRDD[X, Y])(implicit tTag: ClassTag[Gene], xTag: ClassTag[X]): GenomicRDD[(Gene, X), Z]

    Permalink
    Definition Classes
    GenomicRDD

  6. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  8. def filterByOverlappingRegion(query: ReferenceRegion): GeneRDD

    Permalink
    Definition Classes
    GenomicRDD

  9. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. def flattenRddByRegions(): RDD[(ReferenceRegion, Gene)]

    Permalink
    Attributes
    protected
    Definition Classes
    GenomicRDD

  11. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any

  12. def getReferenceRegions(elem: Gene): Seq[ReferenceRegion]

    Permalink
    Attributes
    protected
    Definition Classes
    GeneRDD → GenomicRDD

  13. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any

  14. lazy val jrdd: JavaRDD[Gene]

    Permalink
    Definition Classes
    GenomicRDD

  15. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  16. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef

  17. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef

  18. val rdd: RDD[Gene]

    Permalink
    Definition Classes
    GeneRDD → GenomicRDD

  19. def replaceRdd(newRdd: RDD[Gene]): GeneRDD

    Permalink
    Attributes
    protected
    Definition Classes
    GeneRDD → GenomicRDD

  20. val sequences: SequenceDictionary

    Permalink
    Definition Classes
    GeneRDD → GenomicRDD

  21. def shuffleRegionJoin[X, Y <: GenomicRDD[X, Y], Z <: GenomicRDD[(Gene, X), Z]](genomicRdd: GenomicRDD[X, Y], optPartitions: Option[Int] = None)(implicit tTag: ClassTag[Gene], xTag: ClassTag[X]): GenomicRDD[(Gene, X), Z]

    Permalink
    Definition Classes
    GenomicRDD

  22. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef

  23. def transform(tFn: (RDD[Gene]) ⇒ RDD[Gene]): GeneRDD

    Permalink
    Definition Classes
    GenomicRDD

  24. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from GenomicRDD[Gene, GeneRDD]

Inherited from AnyRef

Inherited from Any

Ungrouped