Class

org.bdgenomics.adam.rdd.variant

VCFOutFormatter

Related Doc: package variant

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case class VCFOutFormatter(headerLines: Seq[VCFHeaderLine]) extends OutFormatter[VariantContext] with Product with Serializable

OutFormatter that reads streaming VCF.

Linear Supertypes
Product, Equals, OutFormatter[VariantContext], Serializable, Serializable, AnyRef, Any
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Inherited
  1. VCFOutFormatter
  2. Product
  3. Equals
  4. OutFormatter
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Visibility
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Instance Constructors

  1. new VCFOutFormatter(headerLines: Seq[VCFHeaderLine])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  7. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  8. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  9. val headerLines: Seq[VCFHeaderLine]

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  10. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  11. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  12. final def notify(): Unit

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    Definition Classes
    AnyRef

  13. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  14. def read(is: InputStream): Iterator[VariantContext]

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    Reads VariantContexts from an input stream.

    Reads VariantContexts from an input stream. Autodetects VCF format.

    is

    An InputStream connected to a process we are piping from.

    returns

    Returns an iterator of AlignmentRecords read from the stream.

    Definition Classes
    VCFOutFormatter → OutFormatter

  15. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  16. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  17. final def wait(arg0: Long, arg1: Int): Unit

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    Annotations
    @throws( ... )

  18. final def wait(arg0: Long): Unit

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    Definition Classes
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    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from OutFormatter[VariantContext]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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