Object

org.bdgenomics.adam.instrumentation

Timers

Related Doc: package instrumentation

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object Timers extends Metrics

Contains Timers that are used to instrument ADAM.

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Metrics, Serializable, Serializable, AnyRef, Any
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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. val BAMLoad: Timer

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  5. val BQSRInDriver: Timer

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  6. val BuildingTrees: Timer

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  7. val ComputeCovariates: Timer

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  8. val ComputeQualityScore: Timer

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  9. val ConvertToSAM: Timer

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  10. val ConvertToSAMRecord: Timer

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  11. val CreateIndelRealignmentTargets: Timer

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  12. val CreateKnownSnpsTable: Timer

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  13. val CreateReferencePositionPair: Timer

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  14. val FindTargets: Timer

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  15. val GetExtraValues: Timer

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  16. val GetReferenceFromReads: Timer

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  17. val GrowingTrees: Timer

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  18. val JoinTargets: Timer

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  19. val LoadAlignmentRecords: Timer

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  20. val LoadFragments: Timer

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  21. val MapTargets: Timer

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  22. val MarkDuplicatesInDriver: Timer

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  23. val MarkReads: Timer

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  24. val ObservationAccumulatorComb: Timer

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  25. val ObservationAccumulatorSeq: Timer

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  26. val ParquetLoad: Timer

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  27. val PerformDuplicateMarking: Timer

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  28. val RealignIndelsInDriver: Timer

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  29. val RealignTargetGroup: Timer

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  30. val RecalibrateRead: Timer

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  31. val RunningMapSideJoin: Timer

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  32. val SAMSave: Timer

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  33. val SaveAsADAM: Timer

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  34. val ScoreAndMarkReads: Timer

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  35. val SortByIndex: Timer

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  36. val SortReads: Timer

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  37. val SortTargets: Timer

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  38. val SortingRightSide: Timer

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  39. val SweepReadOverReferenceForQuality: Timer

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  40. val TreeJoin: Timer

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  41. val TrimCigar: Timer

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  42. val TrimLowQualityInDriver: Timer

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  43. val TrimMDTag: Timer

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  44. val TrimRead: Timer

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  45. val TrimReadsInDriver: Timer

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  46. val WriteADAMRecord: Timer

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  47. val WriteBAMRecord: Timer

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  48. val WriteCRAMRecord: Timer

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  49. val WriteSAMRecord: Timer

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  50. final def asInstanceOf[T0]: T0

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  51. val clock: Clock

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    Metrics

  52. def clone(): AnyRef

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  53. final def eq(arg0: AnyRef): Boolean

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  54. def equals(arg0: Any): Boolean

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  55. def finalize(): Unit

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    @throws( classOf[java.lang.Throwable] )

  56. final def getClass(): Class[_]

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  57. def hashCode(): Int

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  58. final def isInstanceOf[T0]: Boolean

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  59. final def ne(arg0: AnyRef): Boolean

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  60. final def notify(): Unit

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  61. final def notifyAll(): Unit

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  62. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
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  63. def timer(name: String): Timer

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    Definition Classes
    Metrics

  64. def toString(): String

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  65. final def wait(): Unit

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  66. final def wait(arg0: Long, arg1: Int): Unit

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  67. final def wait(arg0: Long): Unit

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Inherited from Metrics

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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