feature

Type Members

1. case class CoverageRDD(rdd: RDD[Coverage], sequences: SequenceDictionary) extends GenomicRDD[Coverage, CoverageRDD] with Product with Serializable

   

   An RDD containing Coverage data.

   An RDD containing Coverage data.

   rdd

   An RDD containing data describing how many reads cover a genomic locus/region.

   sequences

   A dictionary describing the reference genome.

2. case class FeatureRDD(rdd: RDD[Feature], sequences: SequenceDictionary) extends AvroGenomicRDD[Feature, FeatureRDD] with Logging with Product with Serializable

   

   A GenomicRDD that wraps Feature data.

   A GenomicRDD that wraps Feature data.

   rdd

   An RDD of genomic Features.

   sequences

   The reference genome this data is aligned to.