Object

org.bdgenomics.adam.util

Flattener

Related Doc: package util

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object Flattener extends Serializable

Utility singleton for flattening down nested Avro records.

When we refer to a schema as flat, we mean that there are no nested records. We do not mean that the schema does not contain maps or arrays.

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. val SEPARATOR: String

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    This separator is used to generate the flattened name of a nested field.

    This separator is used to generate the flattened name of a nested field. E.g., if a record is nested like so:

    - record Genotype -- variant: Variant --- start: Long --- end: Long -- genotypeState: Int

    With the SEPARATOR "", the flat record will be:

    - record Genotype -- variantstart: Long -- variantend: Long -- genotypeState: Int

  5. final def asInstanceOf[T0]: T0

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  6. def clone(): AnyRef

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  7. final def eq(arg0: AnyRef): Boolean

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  9. def finalize(): Unit

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  10. def flattenRecord(flatSchema: Schema, record: IndexedRecord): IndexedRecord

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    Takes a given nested record and flattens it to correspond to a flattened schema.

    Takes a given nested record and flattens it to correspond to a flattened schema.

    flatSchema

    The flat schema for the new record.

    record

    The nested record to flatten.

    returns

    Returns a new Avro IndexedRecord where every field from the initial record has been copied, but where the schema corresponds to the new flat schema.

  11. def flattenSchema(schema: Schema): Schema

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    Given a possibly nested schema, creates a flat schema.

    Given a possibly nested schema, creates a flat schema.

    schema

    The schema to flatten.

    returns

    Returns a flattened representation of the schema.

  12. final def getClass(): Class[_]

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  13. def hashCode(): Int

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  14. final def isInstanceOf[T0]: Boolean

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  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. final def synchronized[T0](arg0: ⇒ T0): T0

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  19. def toString(): String

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  20. final def wait(): Unit

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  22. final def wait(arg0: Long): Unit

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Inherited from Serializable

Inherited from Serializable

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