PosChecker

abstract def apply(startPos: Long)(implicit successfulReads: SuccessfulReads): Call

abstract def contigLengths: ContigLengths

abstract def readsToCheck: ReadsToCheck

abstract def uncompressedStream: SeekableUncompressedBytes

final def !=(arg0: Any): Boolean

final def ##(): Int

final def ==(arg0: Any): Boolean

def apply(pos: Pos): Call

Main record-checking entry-point

final def asInstanceOf[T0]: T0

val buf: ByteBuffer

def clone(): AnyRef

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

def finalize(): Unit

final def getClass(): Class[_]

def getRefPosError(): Option[RefPosError]

Reusable logic for fetching a reference-sequence index and reference-position

def hashCode(): Int

final def isInstanceOf[T0]: Boolean

final def ne(arg0: AnyRef): Boolean

final def notify(): Unit

final def notifyAll(): Unit

val readNameBuffer: ByteBuffer

def seek(pos: Pos): Unit

final def synchronized[T0](arg0: ⇒ T0): T0

def toString(): String

lazy val uncompressedBytes: ByteChannel

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit