Class/Object

org.hammerlab.bam.check.full.error

Flags

Related Docs: object Flags | package error

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case class Flags(tooFewFixedBlockBytes: Boolean, negativeReadIdx: Boolean, tooLargeReadIdx: Boolean, negativeReadPos: Boolean, tooLargeReadPos: Boolean, negativeNextReadIdx: Boolean, tooLargeNextReadIdx: Boolean, negativeNextReadPos: Boolean, tooLargeNextReadPos: Boolean, tooFewBytesForReadName: Boolean, nonNullTerminatedReadName: Boolean, nonASCIIReadName: Boolean, noReadName: Boolean, emptyReadName: Boolean, tooFewBytesForCigarOps: Boolean, invalidCigarOp: Boolean, emptyMappedCigar: Boolean, emptyMappedSeq: Boolean, tooFewRemainingBytesImplied: Boolean, readsBeforeError: Int) extends Error[Boolean] with Result with Product with Serializable

Information about BAM-record checks at a org.hammerlab.bgzf.Pos.

Linear Supertypes
Serializable, Serializable, Product, Equals, Result, Error[Boolean], AnyRef, Any
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Inherited
  1. Flags
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. Result
  7. Error
  8. AnyRef
  9. Any
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Visibility
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Instance Constructors

  1. new Flags(tooFewFixedBlockBytes: Boolean, negativeReadIdx: Boolean, tooLargeReadIdx: Boolean, negativeReadPos: Boolean, tooLargeReadPos: Boolean, negativeNextReadIdx: Boolean, tooLargeNextReadIdx: Boolean, negativeNextReadPos: Boolean, tooLargeNextReadPos: Boolean, tooFewBytesForReadName: Boolean, nonNullTerminatedReadName: Boolean, nonASCIIReadName: Boolean, noReadName: Boolean, emptyReadName: Boolean, tooFewBytesForCigarOps: Boolean, invalidCigarOp: Boolean, emptyMappedCigar: Boolean, emptyMappedSeq: Boolean, tooFewRemainingBytesImplied: Boolean, readsBeforeError: Int)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def call: Boolean

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    Definition Classes
    Flags → Result

  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. val emptyMappedCigar: Boolean

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    Definition Classes
    Flags → Error

  8. val emptyMappedSeq: Boolean

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    Definition Classes
    Flags → Error

  9. val emptyReadName: Boolean

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    Definition Classes
    Flags → Error

  10. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  11. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  13. val invalidCigarOp: Boolean

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    Definition Classes
    Flags → Error

  14. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  15. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  16. val negativeNextReadIdx: Boolean

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    Definition Classes
    Flags → Error

  17. val negativeNextReadPos: Boolean

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    Definition Classes
    Flags → Error

  18. val negativeReadIdx: Boolean

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    Definition Classes
    Flags → Error

  19. val negativeReadPos: Boolean

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    Definition Classes
    Flags → Error

  20. val noReadName: Boolean

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    Definition Classes
    Flags → Error

  21. val nonASCIIReadName: Boolean

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    Definition Classes
    Flags → Error

  22. val nonNullTerminatedReadName: Boolean

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    Definition Classes
    Flags → Error

  23. final def notify(): Unit

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    Definition Classes
    AnyRef

  24. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  25. val readsBeforeError: Int

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  26. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  27. val tooFewBytesForCigarOps: Boolean

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    Definition Classes
    Flags → Error

  28. val tooFewBytesForReadName: Boolean

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    Definition Classes
    Flags → Error

  29. val tooFewFixedBlockBytes: Boolean

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    Definition Classes
    Flags → Error

  30. val tooFewRemainingBytesImplied: Boolean

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    Definition Classes
    Flags → Error

  31. val tooLargeNextReadIdx: Boolean

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    Definition Classes
    Flags → Error

  32. val tooLargeNextReadPos: Boolean

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    Definition Classes
    Flags → Error

  33. val tooLargeReadIdx: Boolean

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    Definition Classes
    Flags → Error

  34. val tooLargeReadPos: Boolean

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    Definition Classes
    Flags → Error

  35. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  36. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  37. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from Result

Inherited from Error[Boolean]

Inherited from AnyRef

Inherited from Any

Ungrouped