indexed

Type Members

1. case class BlocksAndIndexedRecords(blocks: RDD[Metadata], records: RDD[SortedSet[Pos]]) extends Product with Serializable

   

2. case class Checker(readPositions: SortedSet[Pos]) extends check.Checker[Boolean] with ReadStartFinder with Product with Serializable

   

3. case class IndexedRecordPositions(rdd: RDD[Pos], bounds: Bounds[Pos])(implicit ord: Ordering[Pos]) extends SortedRDD[Pos] with Product with Serializable

   

   Store record-start positions as read from an index built via org.hammerlab.bam.index.IndexRecords

   Store record-start positions as read from an index built via org.hammerlab.bam.index.IndexRecords

   Positions are sorted and partitioned for an efficient ordered-join against corresponding BGZF-blocks, to validate a Checker against ground-truth.