Object/Class

org.hammerlab.bam.header

ContigLengths

Related Docs: class ContigLengths | package header

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object ContigLengths extends Serializable

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Serializable, Serializable, AnyRef, Any
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  1. ContigLengths
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Type Members

  1. type ContigLengthsT = SortedMap[Int, (ContigName, NumLoci)]

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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    Definition Classes
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  4. implicit object ContigLengthsSerializer extends Serializer[ContigLengths]

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  5. implicit val alsoRegister: AlsoRegister[ContigLengths]

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  6. def apply(sequences: Seq[(Int, (ContigName, NumLoci))]): ContigLengths

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  7. def apply(path: Path)(implicit conf: Configuration): ContigLengths

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  8. final def asInstanceOf[T0]: T0

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  9. def clone(): AnyRef

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    Attributes
    protected[java.lang]
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    @throws( ... )

  10. final def eq(arg0: AnyRef): Boolean

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  11. def equals(arg0: Any): Boolean

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  12. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  13. final def getClass(): Class[_]

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    Definition Classes
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  14. def hashCode(): Int

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    Definition Classes
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  15. implicit def htsjdkHeaderToContigLengths(header: SAMFileHeader): ContigLengths

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  16. implicit def htsjdkHeaderToContigLengths(contigLengths: ContigLengths): SAMFileHeader

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  17. final def isInstanceOf[T0]: Boolean

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  18. final def ne(arg0: AnyRef): Boolean

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  19. final def notify(): Unit

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  20. final def notifyAll(): Unit

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  21. def readSAMHeaderFromStream(in: InputStream, conf: Configuration): SAMFileHeader

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  22. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
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  23. implicit def toReferenceContigLengths(contigLengths: ContigLengths): genomics.reference.ContigLengths

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  24. def toString(): String

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    Definition Classes
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  25. implicit def unwrapContigLengths(contigLengths: ContigLengths): ContigLengthsT

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  26. final def wait(): Unit

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    @throws( ... )

  27. final def wait(arg0: Long, arg1: Int): Unit

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  28. final def wait(arg0: Long): Unit

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    Definition Classes
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    @throws( ... )

  29. implicit def wrapContigLengths(contigLengths: ContigLengthsT): ContigLengths

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Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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