1. magic_rdds
2. org
   1. org.hammerlab
      1. org.hammerlab.args
         1. (object)(case class)ByteRanges
         2. (object)(case class)Endpoints
         3. (case class)FindBlockArgs
         4. (case class)FindReadArgs
         5. (object)(trait)Integral
         6. (object)(case class)IntRanges
         7. (case class)LogArgs
         8. (case class)LongRanges
         9. (object)(case class)OffsetLength
         10. (object)(case class)Point
         11. (case class)PostPartitionArgs
         12. (object)(trait)Range
         13. (object)(trait)Ranges
         14. (object)
             SplitSize
      2. org.hammerlab.bam
         1. org.hammerlab.bam.check
            1. (object)(case class)Blocks
            2. (object)(trait)Checker
            3. (object)(class)MaxReadSize
            4. (object)(case class)NextRecord
            5. (trait)PosChecker
            6. (object)(case class)PosMetadata
            7. (trait)ReadStartFinder
            8. (object)(class)ReadsToCheck
            9. (class)SuccessfulReads
            1. org.hammerlab.bam.check.eager
               1. (object)(case class)Checker
            2. org.hammerlab.bam.check.full
               1. (object)(case class)Checker
               1. org.hammerlab.bam.check.full.error
                  1. (trait)CigarOpsError
                  2. (object)(case class)Counts
                  3. (case class)EmptyMapped
                  4. (object)
                     EmptyReadName
                  5. (trait)Error
                  6. (object)(case class)Flags
                  7. (class)FlagsSerializer
                  8. (object)
                     InvalidCigarOp
                  9. (object)(trait)NegativeRefIdx
                  10. (object)
                      NegativeRefIdxAndPos
                  11. (object)(trait)NegativeRefPos
                  12. (object)
                      NonASCIIReadName
                  13. (object)
                      NonNullTerminatedReadName
                  14. (object)
                      NoReadName
                  15. (trait)ReadNameError
                  16. (trait)ReadNameLengthError
                  17. (trait)RefPosError
                  18. (class)Registrar
                  19. (trait)Result
                  20. (case class)Success
                  21. (object)
                      TooFewBytesForCigarOps
                  22. (object)
                      TooFewBytesForReadName
                  23. (object)(trait)TooLargeRefIdx
                  24. (object)
                      TooLargeRefIdxNegativePos
                  25. (object)
                      TooLargeRefPos
            3. org.hammerlab.bam.check.indexed
               1. (object)(case class)BlocksAndIndexedRecords
               2. (object)(case class)Checker
               3. (object)(case class)IndexedRecordPositions
         2. org.hammerlab.bam.header
            1. (object)(case class)ContigLengths
            2. (object)(case class)Header
         3. org.hammerlab.bam.index
            1. (object)(case class)Index
            2. (object)
               IndexRecords
            3. (object)(trait)Read
         4. org.hammerlab.bam.iterator
            1. (object)(case class)PosStream
            2. (trait)PosStreamI
            3. (trait)RecordIterator
            4. (object)(case class)RecordStream
            5. (trait)RecordStreamI
            6. (object)(case class)SeekablePosStream
            7. (trait)SeekableRecordIterator
            8. (object)(case class)SeekableRecordStream
            9. (case class)UnexpectedEOF
         5. org.hammerlab.bam.spark
            1. (object)(case class)BAMRecordRDD
            2. (object)
               FindRecordStart
            3. (case class)NoReadFoundException
            4. (object)(trait)ParallelConfig
            5. (object)(case class)Spark
            6. (object)(case class)Split
            7. (case class)Threads
      3. org.hammerlab.shapeless