org.hammerlab.genomics.loci.iterator

SkippableLocusKeyedIterator

abstract class SkippableLocusKeyedIterator[T] extends SkippableLociIterator[(Locus, T)]

Linear Supertypes
SkippableLociIterator[(Locus, T)], SimpleBufferedIterator[(Locus, T)], BufferedIterator[(Locus, T)], Iterator[(Locus, T)], TraversableOnce[(Locus, T)], GenTraversableOnce[(Locus, T)], AnyRef, Any
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Inherited
  1. SkippableLocusKeyedIterator
  2. SkippableLociIterator
  3. SimpleBufferedIterator
  4. BufferedIterator
  5. Iterator
  6. TraversableOnce
  7. GenTraversableOnce
  8. AnyRef
  9. Any
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  1. Public
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Instance Constructors

  1. new SkippableLocusKeyedIterator()

Type Members

  1. class GroupedIterator[B >: A] extends AbstractIterator[Seq[B]] with Iterator[Seq[B]]

    Definition Classes
    Iterator

Abstract Value Members

  1. abstract def _advance: Option[(Locus, T)]

    Attributes
    protected
    Definition Classes
    SimpleBufferedIterator

Concrete Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. def ++[B >: (Locus, T)](that: ⇒ GenTraversableOnce[B]): Iterator[B]

    Definition Classes
    Iterator

  5. def /:[B](z: B)(op: (B, (Locus, T)) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  6. def :\[B](z: B)(op: ((Locus, T), B) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  7. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  8. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  9. def addString(b: StringBuilder): StringBuilder

    Definition Classes
    TraversableOnce

  10. def addString(b: StringBuilder, sep: String): StringBuilder

    Definition Classes
    TraversableOnce

  11. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder

    Definition Classes
    TraversableOnce

  12. def aggregate[B](z: B)(seqop: (B, (Locus, T)) ⇒ B, combop: (B, B) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  13. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  14. def buffered: SkippableLocusKeyedIterator.this.type

    Definition Classes
    BufferedIterator → Iterator

  15. final def clear(): Unit

    Attributes
    protected
    Definition Classes
    SimpleBufferedIterator

  16. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  17. def collect[B](pf: PartialFunction[(Locus, T), B]): Iterator[B]

    Definition Classes
    Iterator
    Annotations
    @migration
    Migration

    (Changed in version 2.8.0) collect has changed. The previous behavior can be reproduced with toSeq.

  18. def collectFirst[B](pf: PartialFunction[(Locus, T), B]): Option[B]

    Definition Classes
    TraversableOnce

  19. def contains(elem: Any): Boolean

    Definition Classes
    Iterator

  20. def copyToArray[B >: (Locus, T)](xs: Array[B], start: Int, len: Int): Unit

    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  21. def copyToArray[B >: (Locus, T)](xs: Array[B]): Unit

    Definition Classes
    TraversableOnce → GenTraversableOnce

  22. def copyToArray[B >: (Locus, T)](xs: Array[B], start: Int): Unit

    Definition Classes
    TraversableOnce → GenTraversableOnce

  23. def copyToBuffer[B >: (Locus, T)](dest: Buffer[B]): Unit

    Definition Classes
    TraversableOnce

  24. def corresponds[B](that: GenTraversableOnce[B])(p: ((Locus, T), B) ⇒ Boolean): Boolean

    Definition Classes
    Iterator

  25. def count(p: ((Locus, T)) ⇒ Boolean): Int

    Definition Classes
    TraversableOnce → GenTraversableOnce

  26. def drop(n: Int): Iterator[(Locus, T)]

    Definition Classes
    Iterator

  27. def dropWhile(p: ((Locus, T)) ⇒ Boolean): Iterator[(Locus, T)]

    Definition Classes
    Iterator

  28. def duplicate: (Iterator[(Locus, T)], Iterator[(Locus, T)])

    Definition Classes
    Iterator

  29. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  30. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  31. def exists(p: ((Locus, T)) ⇒ Boolean): Boolean

    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  32. def filter(p: ((Locus, T)) ⇒ Boolean): Iterator[(Locus, T)]

    Definition Classes
    Iterator

  33. def filterNot(p: ((Locus, T)) ⇒ Boolean): Iterator[(Locus, T)]

    Definition Classes
    Iterator

  34. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  35. def find(p: ((Locus, T)) ⇒ Boolean): Option[(Locus, T)]

    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  36. def flatMap[B](f: ((Locus, T)) ⇒ GenTraversableOnce[B]): Iterator[B]

    Definition Classes
    Iterator

  37. def fold[A1 >: (Locus, T)](z: A1)(op: (A1, A1) ⇒ A1): A1

    Definition Classes
    TraversableOnce → GenTraversableOnce

  38. def foldLeft[B](z: B)(op: (B, (Locus, T)) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  39. def foldRight[B](z: B)(op: ((Locus, T), B) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  40. def forall(p: ((Locus, T)) ⇒ Boolean): Boolean

    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  41. def foreach[U](f: ((Locus, T)) ⇒ U): Unit

    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  42. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  43. def grouped[B >: (Locus, T)](size: Int): GroupedIterator[B]

    Definition Classes
    Iterator

  44. def hasDefiniteSize: Boolean

    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  45. final def hasNext: Boolean

    Definition Classes
    SimpleBufferedIterator → Iterator

  46. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  47. final def head: (Locus, T)

    Definition Classes
    SimpleBufferedIterator → BufferedIterator

  48. def indexOf[B >: (Locus, T)](elem: B): Int

    Definition Classes
    Iterator

  49. def indexWhere(p: ((Locus, T)) ⇒ Boolean): Int

    Definition Classes
    Iterator

  50. def intersect(loci: LociIterator): SkippableLociIterator[(Locus, T)]

    Definition Classes
    SkippableLociIterator

  51. def isEmpty: Boolean

    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  52. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  53. def isTraversableAgain: Boolean

    Definition Classes
    Iterator → GenTraversableOnce

  54. def length: Int

    Definition Classes
    Iterator

  55. var locus: Locus

    Definition Classes
    SkippableLociIterator

  56. def locusFn: ((Locus, T)) ⇒ Locus

    Definition Classes
    SkippableLocusKeyedIterator → SkippableLociIterator

  57. def map[B](f: ((Locus, T)) ⇒ B): Iterator[B]

    Definition Classes
    Iterator

  58. def max[B >: (Locus, T)](implicit cmp: Ordering[B]): (Locus, T)

    Definition Classes
    TraversableOnce → GenTraversableOnce

  59. def maxBy[B](f: ((Locus, T)) ⇒ B)(implicit cmp: Ordering[B]): (Locus, T)

    Definition Classes
    TraversableOnce → GenTraversableOnce

  60. def min[B >: (Locus, T)](implicit cmp: Ordering[B]): (Locus, T)

    Definition Classes
    TraversableOnce → GenTraversableOnce

  61. def minBy[B](f: ((Locus, T)) ⇒ B)(implicit cmp: Ordering[B]): (Locus, T)

    Definition Classes
    TraversableOnce → GenTraversableOnce

  62. def mkString: String

    Definition Classes
    TraversableOnce → GenTraversableOnce

  63. def mkString(sep: String): String

    Definition Classes
    TraversableOnce → GenTraversableOnce

  64. def mkString(start: String, sep: String, end: String): String

    Definition Classes
    TraversableOnce → GenTraversableOnce

  65. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  66. final def next(): (Locus, T)

    Definition Classes
    SimpleBufferedIterator → Iterator

  67. def nonEmpty: Boolean

    Definition Classes
    TraversableOnce → GenTraversableOnce

  68. final def notify(): Unit

    Definition Classes
    AnyRef

  69. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  70. def padTo[A1 >: (Locus, T)](len: Int, elem: A1): Iterator[A1]

    Definition Classes
    Iterator

  71. def partition(p: ((Locus, T)) ⇒ Boolean): (Iterator[(Locus, T)], Iterator[(Locus, T)])

    Definition Classes
    Iterator

  72. def patch[B >: (Locus, T)](from: Int, patchElems: Iterator[B], replaced: Int): Iterator[B]

    Definition Classes
    Iterator

  73. def postNext(): Unit

    Definition Classes
    SkippableLociIterator → SimpleBufferedIterator

  74. def product[B >: (Locus, T)](implicit num: Numeric[B]): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  75. def reduce[A1 >: (Locus, T)](op: (A1, A1) ⇒ A1): A1

    Definition Classes
    TraversableOnce → GenTraversableOnce

  76. def reduceLeft[B >: (Locus, T)](op: (B, (Locus, T)) ⇒ B): B

    Definition Classes
    TraversableOnce

  77. def reduceLeftOption[B >: (Locus, T)](op: (B, (Locus, T)) ⇒ B): Option[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  78. def reduceOption[A1 >: (Locus, T)](op: (A1, A1) ⇒ A1): Option[A1]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  79. def reduceRight[B >: (Locus, T)](op: ((Locus, T), B) ⇒ B): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  80. def reduceRightOption[B >: (Locus, T)](op: ((Locus, T), B) ⇒ B): Option[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  81. def reversed: List[(Locus, T)]

    Attributes
    protected[this]
    Definition Classes
    TraversableOnce

  82. def sameElements(that: Iterator[_]): Boolean

    Definition Classes
    Iterator

  83. def scanLeft[B](z: B)(op: (B, (Locus, T)) ⇒ B): Iterator[B]

    Definition Classes
    Iterator

  84. def scanRight[B](z: B)(op: ((Locus, T), B) ⇒ B): Iterator[B]

    Definition Classes
    Iterator

  85. def seq: Iterator[(Locus, T)]

    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  86. def size: Int

    Definition Classes
    TraversableOnce → GenTraversableOnce

  87. def skipTo(newLocus: Locus): SkippableLocusKeyedIterator.this.type

    Definition Classes
    SkippableLociIterator

  88. def slice(from: Int, until: Int): Iterator[(Locus, T)]

    Definition Classes
    Iterator

  89. def sliding[B >: (Locus, T)](size: Int, step: Int): GroupedIterator[B]

    Definition Classes
    Iterator

  90. def span(p: ((Locus, T)) ⇒ Boolean): (Iterator[(Locus, T)], Iterator[(Locus, T)])

    Definition Classes
    Iterator

  91. def sum[B >: (Locus, T)](implicit num: Numeric[B]): B

    Definition Classes
    TraversableOnce → GenTraversableOnce

  92. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  93. def take(n: Int): Iterator[(Locus, T)]

    Definition Classes
    Iterator

  94. def takeWhile(p: ((Locus, T)) ⇒ Boolean): Iterator[(Locus, T)]

    Definition Classes
    Iterator

  95. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, (Locus, T), Col[(Locus, T)]]): Col[(Locus, T)]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  96. def toArray[B >: (Locus, T)](implicit arg0: ClassTag[B]): Array[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  97. def toBuffer[B >: (Locus, T)]: Buffer[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  98. def toIndexedSeq: IndexedSeq[(Locus, T)]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  99. def toIterable: Iterable[(Locus, T)]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  100. def toIterator: Iterator[(Locus, T)]

    Definition Classes
    Iterator → GenTraversableOnce

  101. def toList: List[(Locus, T)]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  102. def toMap[T, U](implicit ev: <:<[(Locus, T), (T, U)]): Map[T, U]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  103. def toSeq: Seq[(Locus, T)]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  104. def toSet[B >: (Locus, T)]: Set[B]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  105. def toStream: Stream[(Locus, T)]

    Definition Classes
    Iterator → GenTraversableOnce

  106. def toString(): String

    Definition Classes
    Iterator → AnyRef → Any

  107. def toTraversable: Traversable[(Locus, T)]

    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  108. def toVector: Vector[(Locus, T)]

    Definition Classes
    TraversableOnce → GenTraversableOnce

  109. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  110. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  111. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  112. def withFilter(p: ((Locus, T)) ⇒ Boolean): Iterator[(Locus, T)]

    Definition Classes
    Iterator

  113. def zip[B](that: Iterator[B]): Iterator[((Locus, T), B)]

    Definition Classes
    Iterator

  114. def zipAll[B, A1 >: (Locus, T), B1 >: B](that: Iterator[B], thisElem: A1, thatElem: B1): Iterator[(A1, B1)]

    Definition Classes
    Iterator

  115. def zipWithIndex: Iterator[((Locus, T), Int)]

    Definition Classes
    Iterator

Deprecated Value Members

  1. def /:\[A1 >: (Locus, T)](z: A1)(op: (A1, A1) ⇒ A1): A1

    Definition Classes
    GenTraversableOnce
    Annotations
    @deprecated
    Deprecated

    (Since version 2.10.0) use fold instead

Inherited from SkippableLociIterator[(Locus, T)]

Inherited from SimpleBufferedIterator[(Locus, T)]

Inherited from BufferedIterator[(Locus, T)]

Inherited from Iterator[(Locus, T)]

Inherited from TraversableOnce[(Locus, T)]

Inherited from GenTraversableOnce[(Locus, T)]

Inherited from AnyRef

Inherited from Any

Ungrouped