Object/Trait

org.hammerlab.genomics.loci.parsing

ParsedLociRange

Related Docs: trait ParsedLociRange | package parsing

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object ParsedLociRange

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. def apply(lociRangeStr: String)(implicit factory: Factory): Option[ParsedLociRange]

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    Parse a (string) loci expression and add it to the builder.

    Parse a (string) loci expression and add it to the builder. Example expressions:

    "all": all sites on all contigs. "none": no loci, used as a default in some places. "chr1,chr3": all sites on contigs chr1 and chr3. "chr1:10000-20000,chr2": sites x where 10000 <= x < 20000 on chr1, all sites on chr2. "chr1:10000": just chr1, position 10000; equivalent to "chr1:10000-10001". "chr1:10000-": chr1, from position 10000 to the end of chr1.

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  7. val contigAndLoci: Regex

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  8. val contigOnly: Regex

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