Class

org.hammerlab.genomics.loci.iterator

LociIterator

Related Doc: package iterator

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class LociIterator extends SkippableLociIterator[Locus]

Linear Supertypes
SkippableLociIterator[Locus], SimpleBufferedIterator[Locus], BufferedIterator[Locus], Iterator[Locus], TraversableOnce[Locus], GenTraversableOnce[Locus], AnyRef, Any
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Inherited
  1. LociIterator
  2. SkippableLociIterator
  3. SimpleBufferedIterator
  4. BufferedIterator
  5. Iterator
  6. TraversableOnce
  7. GenTraversableOnce
  8. AnyRef
  9. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new LociIterator(intervals: BufferedIterator[Interval])

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Type Members

  1. class GroupedIterator[B >: A] extends AbstractIterator[Seq[B]] with Iterator[Seq[B]]

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    Definition Classes
    Iterator

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. def ++[B >: Locus](that: ⇒ GenTraversableOnce[B]): Iterator[B]

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    Definition Classes
    Iterator
  4. def /:[B](z: B)(op: (B, Locus) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  5. def :\[B](z: B)(op: (Locus, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  6. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  7. def _advance: Option[Locus]

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    Definition Classes
    LociIterator → SimpleBufferedIterator
  8. def addString(b: StringBuilder): StringBuilder

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    Definition Classes
    TraversableOnce
  9. def addString(b: StringBuilder, sep: String): StringBuilder

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    Definition Classes
    TraversableOnce
  10. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder

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    Definition Classes
    TraversableOnce
  11. def aggregate[B](z: ⇒ B)(seqop: (B, Locus) ⇒ B, combop: (B, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  12. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  13. def buffered: LociIterator.this.type

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    Definition Classes
    BufferedIterator → Iterator
  14. final def clear(): Unit

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    Attributes
    protected
    Definition Classes
    SimpleBufferedIterator
  15. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  16. def collect[B](pf: PartialFunction[Locus, B]): Iterator[B]

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    Definition Classes
    Iterator
    Annotations
    @migration
    Migration

    (Changed in version 2.8.0) collect has changed. The previous behavior can be reproduced with toSeq.

  17. def collectFirst[B](pf: PartialFunction[Locus, B]): Option[B]

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    Definition Classes
    TraversableOnce
  18. def contains(elem: Any): Boolean

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    Definition Classes
    Iterator
  19. def copyToArray[B >: Locus](xs: Array[B], start: Int, len: Int): Unit

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  20. def copyToArray[B >: Locus](xs: Array[B]): Unit

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  21. def copyToArray[B >: Locus](xs: Array[B], start: Int): Unit

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  22. def copyToBuffer[B >: Locus](dest: Buffer[B]): Unit

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    Definition Classes
    TraversableOnce
  23. def corresponds[B](that: GenTraversableOnce[B])(p: (Locus, B) ⇒ Boolean): Boolean

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    Definition Classes
    Iterator
  24. def count(p: (Locus) ⇒ Boolean): Int

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  25. def drop(n: Int): Iterator[Locus]

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    Definition Classes
    Iterator
  26. def dropWhile(p: (Locus) ⇒ Boolean): Iterator[Locus]

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    Definition Classes
    Iterator
  27. def duplicate: (Iterator[Locus], Iterator[Locus])

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    Definition Classes
    Iterator
  28. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  29. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  30. def exists(p: (Locus) ⇒ Boolean): Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  31. def filter(p: (Locus) ⇒ Boolean): Iterator[Locus]

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    Definition Classes
    Iterator
  32. def filterNot(p: (Locus) ⇒ Boolean): Iterator[Locus]

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    Definition Classes
    Iterator
  33. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  34. def find(p: (Locus) ⇒ Boolean): Option[Locus]

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  35. def flatMap[B](f: (Locus) ⇒ GenTraversableOnce[B]): Iterator[B]

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    Definition Classes
    Iterator
  36. def fold[A1 >: Locus](z: A1)(op: (A1, A1) ⇒ A1): A1

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  37. def foldLeft[B](z: B)(op: (B, Locus) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  38. def foldRight[B](z: B)(op: (Locus, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  39. def forall(p: (Locus) ⇒ Boolean): Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  40. def foreach[U](f: (Locus) ⇒ U): Unit

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  41. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  42. def grouped[B >: Locus](size: Int): GroupedIterator[B]

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    Definition Classes
    Iterator
  43. def hasDefiniteSize: Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  44. final def hasNext: Boolean

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    Definition Classes
    SimpleBufferedIterator → Iterator
  45. def hashCode(): Int

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    Definition Classes
    AnyRef → Any
  46. final def head: Locus

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    Definition Classes
    SimpleBufferedIterator → BufferedIterator
  47. def indexOf[B >: Locus](elem: B): Int

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    Definition Classes
    Iterator
  48. def indexWhere(p: (Locus) ⇒ Boolean): Int

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    Definition Classes
    Iterator
  49. def intersect(loci: LociIterator): SkippableLociIterator[Locus]

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    Definition Classes
    SkippableLociIterator
  50. def isEmpty: Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  51. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  52. def isTraversableAgain: Boolean

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    Definition Classes
    Iterator → GenTraversableOnce
  53. def length: Int

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    Definition Classes
    Iterator
  54. var locus: Locus

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    Definition Classes
    SkippableLociIterator
  55. def locusFn: (Locus) ⇒ Locus

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    Definition Classes
    LociIteratorSkippableLociIterator
  56. def map[B](f: (Locus) ⇒ B): Iterator[B]

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    Definition Classes
    Iterator
  57. def max[B >: Locus](implicit cmp: Ordering[B]): Locus

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  58. def maxBy[B](f: (Locus) ⇒ B)(implicit cmp: Ordering[B]): Locus

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  59. def min[B >: Locus](implicit cmp: Ordering[B]): Locus

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  60. def minBy[B](f: (Locus) ⇒ B)(implicit cmp: Ordering[B]): Locus

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  61. def mkString: String

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  62. def mkString(sep: String): String

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  63. def mkString(start: String, sep: String, end: String): String

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  64. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  65. final def next(): Locus

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    Definition Classes
    SimpleBufferedIterator → Iterator
  66. def nonEmpty: Boolean

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  67. final def notify(): Unit

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    Definition Classes
    AnyRef
  68. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  69. def padTo[A1 >: Locus](len: Int, elem: A1): Iterator[A1]

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    Definition Classes
    Iterator
  70. def partition(p: (Locus) ⇒ Boolean): (Iterator[Locus], Iterator[Locus])

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    Definition Classes
    Iterator
  71. def patch[B >: Locus](from: Int, patchElems: Iterator[B], replaced: Int): Iterator[B]

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    Definition Classes
    Iterator
  72. def postNext(): Unit

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    Definition Classes
    SkippableLociIterator → SimpleBufferedIterator
  73. def product[B >: Locus](implicit num: Numeric[B]): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  74. def reduce[A1 >: Locus](op: (A1, A1) ⇒ A1): A1

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  75. def reduceLeft[B >: Locus](op: (B, Locus) ⇒ B): B

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    Definition Classes
    TraversableOnce
  76. def reduceLeftOption[B >: Locus](op: (B, Locus) ⇒ B): Option[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  77. def reduceOption[A1 >: Locus](op: (A1, A1) ⇒ A1): Option[A1]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  78. def reduceRight[B >: Locus](op: (Locus, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  79. def reduceRightOption[B >: Locus](op: (Locus, B) ⇒ B): Option[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  80. def reversed: List[Locus]

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    Attributes
    protected[this]
    Definition Classes
    TraversableOnce
  81. def sameElements(that: Iterator[_]): Boolean

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    Definition Classes
    Iterator
  82. def scanLeft[B](z: B)(op: (B, Locus) ⇒ B): Iterator[B]

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    Definition Classes
    Iterator
  83. def scanRight[B](z: B)(op: (Locus, B) ⇒ B): Iterator[B]

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    Definition Classes
    Iterator
  84. def seq: Iterator[Locus]

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  85. def size: Int

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  86. def skipTo(newLocus: Locus): LociIterator.this.type

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    Definition Classes
    SkippableLociIterator
  87. def slice(from: Int, until: Int): Iterator[Locus]

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    Definition Classes
    Iterator
  88. def sliding[B >: Locus](size: Int, step: Int): GroupedIterator[B]

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    Definition Classes
    Iterator
  89. def span(p: (Locus) ⇒ Boolean): (Iterator[Locus], Iterator[Locus])

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    Definition Classes
    Iterator
  90. def sum[B >: Locus](implicit num: Numeric[B]): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  91. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  92. def take(n: Int): Iterator[Locus]

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    Definition Classes
    Iterator
  93. def takeWhile(p: (Locus) ⇒ Boolean): Iterator[Locus]

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    Definition Classes
    Iterator
  94. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, Locus, Col[Locus]]): Col[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  95. def toArray[B >: Locus](implicit arg0: ClassTag[B]): Array[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  96. def toBuffer[B >: Locus]: Buffer[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  97. def toIndexedSeq: IndexedSeq[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  98. def toIterable: Iterable[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  99. def toIterator: Iterator[Locus]

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    Definition Classes
    Iterator → GenTraversableOnce
  100. def toList: List[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  101. def toMap[T, U](implicit ev: <:<[Locus, (T, U)]): Map[T, U]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  102. def toSeq: Seq[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  103. def toSet[B >: Locus]: Set[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  104. def toStream: Stream[Locus]

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    Definition Classes
    Iterator → GenTraversableOnce
  105. def toString(): String

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    Definition Classes
    Iterator → AnyRef → Any
  106. def toTraversable: Traversable[Locus]

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce
  107. def toVector: Vector[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce
  108. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  109. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  110. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  111. def withFilter(p: (Locus) ⇒ Boolean): Iterator[Locus]

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    Definition Classes
    Iterator
  112. def zip[B](that: Iterator[B]): Iterator[(Locus, B)]

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    Definition Classes
    Iterator
  113. def zipAll[B, A1 >: Locus, B1 >: B](that: Iterator[B], thisElem: A1, thatElem: B1): Iterator[(A1, B1)]

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    Definition Classes
    Iterator
  114. def zipWithIndex: Iterator[(Locus, Int)]

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    Definition Classes
    Iterator

Inherited from SkippableLociIterator[Locus]

Inherited from SimpleBufferedIterator[Locus]

Inherited from BufferedIterator[Locus]

Inherited from Iterator[Locus]

Inherited from TraversableOnce[Locus]

Inherited from GenTraversableOnce[Locus]

Inherited from AnyRef

Inherited from Any

Ungrouped