Parse string representations of loci ranges, either from one string (lociOpt) or a file with one range per line (lociFileOpt), and return a ParsedLoci encapsulating the result.
Parse string representations of loci ranges, either from one string (lociOpt) or a file with one range per line (lociFileOpt), and return a ParsedLoci encapsulating the result. The latter can then be converted into a org.hammerlab.genomics.loci.set.LociSet when contig-lengths are available / have been parsed from read-sets.