Trait/Object

org.hammerlab.genomics.loci.parsing

ParsedLoci

Related Docs: object ParsedLoci | package parsing

Permalink

sealed trait ParsedLoci extends Any

Representation of genomic-loci ranges that may be used to instantiate a org.hammerlab.genomics.loci.set.LociSet.

Constituent ranges can be open-ended, so a ParsedLoci is typically a short-lived intermediate representation between String representations of ranges (possibly originating from cmdline-flags or a file) and a org.hammerlab.genomics.loci.set.LociSet whose open-ended ranges have been "resolved" using contig-length information found in a BAM header.

The two implementations are:

Examples:

Linear Supertypes
Any
Known Subclasses
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. ParsedLoci
  2. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Abstract Value Members

  1. abstract def getClass(): Class[_]

    Permalink
    Definition Classes
    Any

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    Any
  2. final def ##(): Int

    Permalink
    Definition Classes
    Any
  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    Any
  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any
  5. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    Any
  6. def hashCode(): Int

    Permalink
    Definition Classes
    Any
  7. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any
  8. def toString(): String

    Permalink
    Definition Classes
    Any

Inherited from Any

Ungrouped