Class

org.hammerlab.genomics.loci.iterator

LociIterator

Related Doc: package iterator

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class LociIterator extends SkippableLociIterator[Locus]

Linear Supertypes
SkippableLociIterator[Locus], SimpleIterator[Locus], BufferedIterator[Locus], Iterator[Locus], TraversableOnce[Locus], GenTraversableOnce[Locus], AnyRef, Any
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Inherited
  1. LociIterator
  2. SkippableLociIterator
  3. SimpleIterator
  4. BufferedIterator
  5. Iterator
  6. TraversableOnce
  7. GenTraversableOnce
  8. AnyRef
  9. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new LociIterator(intervals: BufferedIterator[Interval])

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Type Members

  1. class GroupedIterator[B >: A] extends AbstractIterator[Seq[B]] with Iterator[Seq[B]]

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    Definition Classes
    Iterator

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. def ++[B >: Locus](that: ⇒ GenTraversableOnce[B]): Iterator[B]

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    Definition Classes
    Iterator

  4. def /:[B](z: B)(op: (B, Locus) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  5. def :\[B](z: B)(op: (Locus, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  6. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  7. def _advance: Option[Locus]

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    Definition Classes
    LociIterator → SimpleIterator

  8. def addString(b: StringBuilder): StringBuilder

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    Definition Classes
    TraversableOnce

  9. def addString(b: StringBuilder, sep: String): StringBuilder

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    Definition Classes
    TraversableOnce

  10. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder

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    Definition Classes
    TraversableOnce

  11. def aggregate[B](z: ⇒ B)(seqop: (B, Locus) ⇒ B, combop: (B, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  12. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  13. def buffered: LociIterator.this.type

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    Definition Classes
    BufferedIterator → Iterator

  14. def clear(): Unit

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    Definition Classes
    SimpleIterator

  15. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  16. def collect[B](pf: PartialFunction[Locus, B]): Iterator[B]

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    Definition Classes
    Iterator
    Annotations
    @migration
    Migration

    (Changed in version 2.8.0) collect has changed. The previous behavior can be reproduced with toSeq.

  17. def collectFirst[B](pf: PartialFunction[Locus, B]): Option[B]

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    Definition Classes
    TraversableOnce

  18. def contains(elem: Any): Boolean

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    Definition Classes
    Iterator

  19. def copyToArray[B >: Locus](xs: Array[B], start: Int, len: Int): Unit

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  20. def copyToArray[B >: Locus](xs: Array[B]): Unit

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  21. def copyToArray[B >: Locus](xs: Array[B], start: Int): Unit

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  22. def copyToBuffer[B >: Locus](dest: Buffer[B]): Unit

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    Definition Classes
    TraversableOnce

  23. def corresponds[B](that: GenTraversableOnce[B])(p: (Locus, B) ⇒ Boolean): Boolean

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    Definition Classes
    Iterator

  24. def count(p: (Locus) ⇒ Boolean): Int

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  25. def done(): Unit

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    Attributes
    protected
    Definition Classes
    SimpleIterator

  26. def drop(n: Int): Iterator[Locus]

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    Definition Classes
    Iterator

  27. def dropWhile(p: (Locus) ⇒ Boolean): Iterator[Locus]

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    Definition Classes
    Iterator

  28. def duplicate: (Iterator[Locus], Iterator[Locus])

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    Definition Classes
    Iterator

  29. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  30. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  31. def exists(p: (Locus) ⇒ Boolean): Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  32. def filter(p: (Locus) ⇒ Boolean): Iterator[Locus]

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    Definition Classes
    Iterator

  33. def filterNot(p: (Locus) ⇒ Boolean): Iterator[Locus]

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    Definition Classes
    Iterator

  34. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  35. def find(p: (Locus) ⇒ Boolean): Option[Locus]

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  36. def flatMap[B](f: (Locus) ⇒ GenTraversableOnce[B]): Iterator[B]

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    Definition Classes
    Iterator

  37. def fold[A1 >: Locus](z: A1)(op: (A1, A1) ⇒ A1): A1

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  38. def foldLeft[B](z: B)(op: (B, Locus) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  39. def foldRight[B](z: B)(op: (Locus, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  40. def forall(p: (Locus) ⇒ Boolean): Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  41. def foreach[U](f: (Locus) ⇒ U): Unit

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  42. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  43. def grouped[B >: Locus](size: Int): GroupedIterator[B]

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    Definition Classes
    Iterator

  44. def hasDefiniteSize: Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  45. final def hasNext: Boolean

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    Definition Classes
    SimpleIterator → Iterator

  46. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  47. final def head: Locus

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    Definition Classes
    SimpleIterator → BufferedIterator

  48. def indexOf[B >: Locus](elem: B): Int

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    Definition Classes
    Iterator

  49. def indexWhere(p: (Locus) ⇒ Boolean): Int

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    Definition Classes
    Iterator

  50. def intersect(loci: LociIterator): SkippableLociIterator[Locus]

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    Definition Classes
    SkippableLociIterator

  51. def isEmpty: Boolean

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  52. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  53. def isTraversableAgain: Boolean

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    Definition Classes
    Iterator → GenTraversableOnce

  54. def length: Int

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    Definition Classes
    Iterator

  55. var locus: Locus

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    Definition Classes
    SkippableLociIterator

  56. def locusFn: (Locus) ⇒ Locus

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    Definition Classes
    LociIterator → SkippableLociIterator

  57. def map[B](f: (Locus) ⇒ B): Iterator[B]

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    Definition Classes
    Iterator

  58. def max[B >: Locus](implicit cmp: Ordering[B]): Locus

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  59. def maxBy[B](f: (Locus) ⇒ B)(implicit cmp: Ordering[B]): Locus

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  60. def min[B >: Locus](implicit cmp: Ordering[B]): Locus

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  61. def minBy[B](f: (Locus) ⇒ B)(implicit cmp: Ordering[B]): Locus

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  62. def mkString: String

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  63. def mkString(sep: String): String

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  64. def mkString(start: String, sep: String, end: String): String

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  65. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  66. final def next(): Locus

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    Definition Classes
    SimpleIterator → Iterator

  67. def nonEmpty: Boolean

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  68. final def notify(): Unit

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    Definition Classes
    AnyRef

  69. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  70. def padTo[A1 >: Locus](len: Int, elem: A1): Iterator[A1]

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    Definition Classes
    Iterator

  71. def partition(p: (Locus) ⇒ Boolean): (Iterator[Locus], Iterator[Locus])

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    Definition Classes
    Iterator

  72. def patch[B >: Locus](from: Int, patchElems: Iterator[B], replaced: Int): Iterator[B]

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    Definition Classes
    Iterator

  73. def postNext(): Unit

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    Definition Classes
    SkippableLociIterator → SimpleIterator

  74. def product[B >: Locus](implicit num: Numeric[B]): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  75. def reduce[A1 >: Locus](op: (A1, A1) ⇒ A1): A1

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  76. def reduceLeft[B >: Locus](op: (B, Locus) ⇒ B): B

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    Definition Classes
    TraversableOnce

  77. def reduceLeftOption[B >: Locus](op: (B, Locus) ⇒ B): Option[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  78. def reduceOption[A1 >: Locus](op: (A1, A1) ⇒ A1): Option[A1]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  79. def reduceRight[B >: Locus](op: (Locus, B) ⇒ B): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  80. def reduceRightOption[B >: Locus](op: (Locus, B) ⇒ B): Option[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  81. def reversed: List[Locus]

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    Attributes
    protected[this]
    Definition Classes
    TraversableOnce

  82. def sameElements(that: Iterator[_]): Boolean

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    Definition Classes
    Iterator

  83. def scanLeft[B](z: B)(op: (B, Locus) ⇒ B): Iterator[B]

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    Definition Classes
    Iterator

  84. def scanRight[B](z: B)(op: (Locus, B) ⇒ B): Iterator[B]

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    Definition Classes
    Iterator

  85. def seq: Iterator[Locus]

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  86. def size: Int

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  87. def skipTo(newLocus: Locus): LociIterator.this.type

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    Definition Classes
    SkippableLociIterator

  88. def slice(from: Int, until: Int): Iterator[Locus]

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    Definition Classes
    Iterator

  89. def sliding[B >: Locus](size: Int, step: Int): GroupedIterator[B]

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    Definition Classes
    Iterator

  90. def span(p: (Locus) ⇒ Boolean): (Iterator[Locus], Iterator[Locus])

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    Definition Classes
    Iterator

  91. def sum[B >: Locus](implicit num: Numeric[B]): B

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  92. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  93. def take(n: Int): Iterator[Locus]

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    Definition Classes
    Iterator

  94. def takeWhile(p: (Locus) ⇒ Boolean): Iterator[Locus]

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    Definition Classes
    Iterator

  95. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, Locus, Col[Locus]]): Col[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  96. def toArray[B >: Locus](implicit arg0: ClassTag[B]): Array[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  97. def toBuffer[B >: Locus]: Buffer[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  98. def toIndexedSeq: IndexedSeq[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  99. def toIterable: Iterable[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  100. def toIterator: Iterator[Locus]

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    Definition Classes
    Iterator → GenTraversableOnce

  101. def toList: List[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  102. def toMap[T, U](implicit ev: <:<[Locus, (T, U)]): Map[T, U]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  103. def toSeq: Seq[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  104. def toSet[B >: Locus]: Set[B]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  105. def toStream: Stream[Locus]

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    Definition Classes
    Iterator → GenTraversableOnce

  106. def toString(): String

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    Definition Classes
    SimpleIterator → Iterator → AnyRef → Any

  107. def toTraversable: Traversable[Locus]

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    Definition Classes
    Iterator → TraversableOnce → GenTraversableOnce

  108. def toVector: Vector[Locus]

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    Definition Classes
    TraversableOnce → GenTraversableOnce

  109. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  110. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  111. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  112. def withFilter(p: (Locus) ⇒ Boolean): Iterator[Locus]

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    Definition Classes
    Iterator

  113. def zip[B](that: Iterator[B]): Iterator[(Locus, B)]

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    Definition Classes
    Iterator

  114. def zipAll[B, A1 >: Locus, B1 >: B](that: Iterator[B], thisElem: A1, thatElem: B1): Iterator[(A1, B1)]

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    Definition Classes
    Iterator

  115. def zipWithIndex: Iterator[(Locus, Int)]

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    Definition Classes
    Iterator

Inherited from SkippableLociIterator[Locus]

Inherited from SimpleIterator[Locus]

Inherited from BufferedIterator[Locus]

Inherited from Iterator[Locus]

Inherited from TraversableOnce[Locus]

Inherited from GenTraversableOnce[Locus]

Inherited from AnyRef

Inherited from Any

Ungrouped