org.hammerlab.genomics.readsets.io

ReadFilterArgs

trait ReadFilterArgs extends LociArgs

Linear Supertypes
LociArgs, AnyRef, Any
Known Subclasses
Arguments, Base, SingleSampleArgs, TumorNormalReadsArgs
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  1. ReadFilterArgs
  2. LociArgs
  3. AnyRef
  4. Any
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Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  13. var includeDuplicates: Boolean

  14. var includeFailedQualityChecks: Boolean

  15. var includeSingleEnd: Boolean

  16. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  17. var lociFileOpt: Option[String]

    Definition Classes
    LociArgs

  18. var lociStrOpt: Option[String]

    Definition Classes
    LociArgs

  19. var minAlignmentQualityOpt: Option[Int]

  20. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  21. final def notify(): Unit

    Definition Classes
    AnyRef

  22. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  23. var onlyMappedReads: Boolean

  24. def parseConfig(hadoopConfiguration: Configuration): InputConfig

  25. var splitSize: Option[String]

  26. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  27. def toString(): String

    Definition Classes
    AnyRef → Any

  28. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  29. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  30. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from LociArgs

Inherited from AnyRef

Inherited from Any

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