Trait

org.hammerlab.genomics.reference.ContigName

Factory

Related Doc: package ContigName

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sealed trait Factory extends Serializable with (String) ⇒ ContigName

Interface for classes that gate the construction of ContigName instances, and can optionally normalize/validate them.

Strict is implicitly used by default and verifies that contigs of different "styles" are not mixed.

Importing Normalization.Lenient will disable such checks.

Linear Supertypes
(String) ⇒ ContigName, Serializable, Serializable, AnyRef, Any
Known Subclasses
Lenient, LenientInterface, Strict
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. Factory
  2. Function1
  3. Serializable
  4. Serializable
  5. AnyRef
  6. Any
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Visibility
  1. Public
  2. All

Abstract Value Members

  1. abstract def normalize(name: String): String

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Concrete Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. def andThen[A](g: (ContigName) ⇒ A): (String) ⇒ A

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    Definition Classes
    Function1
    Annotations
    @unspecialized()

  5. def apply(name: String): ContigName

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    Definition Classes
    Factory → Function1

  6. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. def compose[A](g: (A) ⇒ String): (A) ⇒ ContigName

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    Definition Classes
    Function1
    Annotations
    @unspecialized()

  9. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  10. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  11. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  13. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  14. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  15. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  16. final def notify(): Unit

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    Definition Classes
    AnyRef

  17. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  18. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  19. def toString(): String

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    Definition Classes
    Function1 → AnyRef → Any

  20. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from (String) ⇒ ContigName

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped