Trait

org.hammerlab.genomics.reference

ContigSequence

Related Doc: package reference

Permalink

trait ContigSequence extends BasesBuffer

Linear Supertypes
BasesBuffer, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. ContigSequence
  2. BasesBuffer
  3. AnyRef
  4. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Type Members

  1. type LengthT = Locus

    Permalink
    Definition Classes
    ContigSequence → BasesBuffer

Abstract Value Members

  1. abstract def apply(locus: Locus): Base

    Permalink
    Definition Classes
    ContigSequence → BasesBuffer

  2. abstract def length: NumLoci

    Permalink
    Definition Classes
    ContigSequence → BasesBuffer

  3. abstract def slice(start: Locus, length: Int): Bases

    Permalink

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any

  5. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  7. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  8. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any

  10. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  11. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any

  12. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  13. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef

  15. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef

  16. def toString(): String

    Permalink
    Definition Classes
    AnyRef → Any

  17. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  18. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  19. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from BasesBuffer

Inherited from AnyRef

Inherited from Any

Ungrouped