Object/Class

org.hammerlab.genomics.reference

ContigName

Related Docs: class ContigName | package reference

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object ContigName extends Serializable

Helpers for dealing with contig-name strings.

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Serializable, Serializable, AnyRef, Any
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Type Members

  1. sealed trait Factory extends Serializable with (String) ⇒ ContigName

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    Interface for classes that gate the construction of ContigName instances, and can optionally normalize/validate them.

    Interface for classes that gate the construction of ContigName instances, and can optionally normalize/validate them.

    Strict is implicitly used by default and verifies that contigs of different "styles" are not mixed.

    Importing Normalization.Lenient will disable such checks.

  2. trait LenientInterface extends Factory

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. object Normalization

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  5. implicit object Strict extends Factory

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  6. def apply(name: String)(implicit factory: Factory): ContigName

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  7. final def asInstanceOf[T0]: T0

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  8. def clone(): AnyRef

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    protected[java.lang]
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  9. final def eq(arg0: AnyRef): Boolean

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  10. def equals(arg0: Any): Boolean

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  11. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  12. final def getClass(): Class[_]

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  13. def hashCode(): Int

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  14. final def isInstanceOf[T0]: Boolean

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  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. final def synchronized[T0](arg0: ⇒ T0): T0

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  19. def toString(): String

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  20. final def wait(): Unit

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  21. final def wait(arg0: Long, arg1: Int): Unit

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  22. final def wait(arg0: Long): Unit

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Inherited from Serializable

Inherited from Serializable

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