Trait

org.hammerlab.genomics.reference

Contig

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trait Contig extends BasesBuffer

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BasesBuffer, AnyRef, Any
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Type Members

  1. type LengthT = Locus

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    Definition Classes
    Contig → BasesBuffer

Abstract Value Members

  1. abstract def length: NumLoci

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    Definition Classes
    Contig → BasesBuffer

  2. abstract def slice(start: Locus, length: Int): Bases

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Concrete Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. def apply(locus: Locus): Base

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    Definition Classes
    Contig → BasesBuffer

  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
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    AnyRef
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    @throws( ... )

  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  8. def equals(arg0: Any): Boolean

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    AnyRef → Any

  9. def finalize(): Unit

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    protected[java.lang]
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    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

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    AnyRef → Any

  11. def hashCode(): Int

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    AnyRef → Any

  12. final def isInstanceOf[T0]: Boolean

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  13. final def ne(arg0: AnyRef): Boolean

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    AnyRef

  14. final def notify(): Unit

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    AnyRef

  15. final def notifyAll(): Unit

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    AnyRef

  16. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  17. def toString(): String

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    Definition Classes
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  18. final def wait(): Unit

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    @throws( ... )

  19. final def wait(arg0: Long, arg1: Int): Unit

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  20. final def wait(arg0: Long): Unit

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Inherited from BasesBuffer

Inherited from AnyRef

Inherited from Any

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