Object

org.hammerlab.genomics.reference.ContigName

Strict

Related Doc: package ContigName

Permalink

implicit object Strict extends Factory

Linear Supertypes
Factory, (String) ⇒ ContigName, Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. Strict
  2. Factory
  3. Function1
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Type Members

  1. case class InconsistentContigNamesException(name: String) extends Exception with Product with Serializable

    Permalink

    Thrown when conflicting ContigNames are found, e.g.

    Thrown when conflicting ContigNames are found, e.g. "1" and "chr1".

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  4. def andThen[A](g: (ContigName) ⇒ A): (String) ⇒ A

    Permalink
    Definition Classes
    Function1
    Annotations
    @unspecialized()

  5. def apply(name: String): ContigName

    Permalink
    Definition Classes
    Factory → Function1

  6. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any

  7. def clear(): Unit

    Permalink

  8. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. def compose[A](g: (A) ⇒ String): (A) ⇒ ContigName

    Permalink
    Definition Classes
    Function1
    Annotations
    @unspecialized()

  10. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  11. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  12. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  13. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any

  14. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  15. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any

  16. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  17. def normalize(name: String): String

    Permalink
    Definition Classes
    Strict → Factory

  18. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef

  19. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef

  20. var seenChrsOpt: Option[Boolean]

    Permalink

    True iff a contig-name ∈ {1-22,X,Y} with "chr" prefix has been observed.

    True iff a contig-name ∈ {1-22,X,Y} with "chr" prefix has been observed. False iff a contig-name ∈ {1-22,X,Y} without "chr" prefix has been observed.

  21. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef

  22. def toString(): String

    Permalink
    Definition Classes
    Strict → Function1 → AnyRef → Any

  23. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  24. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Factory

Inherited from (String) ⇒ ContigName

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped