Class

org.hammerlab.genomics.cigar

Element

Related Doc: package cigar

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implicit final class Element extends AnyVal

Enriched HTSJDK CigarElement.

Linear Supertypes
AnyVal, Any
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Instance Constructors

  1. new Element(element: CigarElement)

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. val element: CigarElement

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  6. def getClass(): Class[_ <: AnyVal]

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  7. def getReadLength: Int

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    The length of a cigar element in read coordinate space.

    The length of a cigar element in read coordinate space.

    returns

    Length of CigarElement, 0 if it does not consume any read bases.

  8. def getReferenceLength: Int

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    The length of a cigar element in reference coordinate space.

    The length of a cigar element in reference coordinate space.

    returns

    Length of CigarElement, 0 if it does not consume any reference bases.

  9. def isClipped: Boolean

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    Is the given samtools CigarElement a (hard/soft) clip?

  10. final def isInstanceOf[T0]: Boolean

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  11. def toString(): String

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Inherited from AnyVal

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