org.hammerlab.genomics.reference

Interval

trait Interval extends Ordered[Interval]

Linear Supertypes
Ordered[Interval], Comparable[Interval], AnyRef, Any
Known Subclasses
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  2. Ordered
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Abstract Value Members

  1. abstract def end: Locus

    The end position on the genome, *exclusive*.

    The end position on the genome, *exclusive*. Must be non-negative.

  2. abstract def start: Locus

    Start position on the genome, inclusive.

    Start position on the genome, inclusive. Must be non-negative.

Concrete Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. def <(that: Interval): Boolean

    Definition Classes
    Ordered
  5. def <=(that: Interval): Boolean

    Definition Classes
    Ordered
  6. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  7. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  8. def >(that: Interval): Boolean

    Definition Classes
    Ordered
  9. def >=(that: Interval): Boolean

    Definition Classes
    Ordered
  10. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  11. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  12. def compare(other: Interval): Int

    Comparisons between ranges.

    Comparisons between ranges. Order is DESCENDING (i.e. reversed) from by start.

    Definition Classes
    Interval → Ordered
  13. def compareTo(that: Interval): Int

    Definition Classes
    Ordered → Comparable
  14. def contains(locus: Locus): Boolean

  15. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  16. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  17. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  18. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  19. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  20. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  21. def iterator(): Iterator[Long]

    Iterate through elements in the range.

  22. def length: NumLoci

    Number of elements in the range.

  23. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  24. final def notify(): Unit

    Definition Classes
    AnyRef
  25. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  26. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  27. def toString(): String

    Definition Classes
    AnyRef → Any
  28. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  29. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  30. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Ordered[Interval]

Inherited from Comparable[Interval]

Inherited from AnyRef

Inherited from Any

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