TestRegion

Value Members

1. final def !=(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

2. final def !=(arg0: Any): Boolean

   Definition Classes

   Any

3. final def ##(): Int

   Definition Classes

   AnyRef → Any

4. def <(that: Interval): Boolean

   Definition Classes

   Ordered

5. def <=(that: Interval): Boolean

   Definition Classes

   Ordered

6. final def ==(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

7. final def ==(arg0: Any): Boolean

   Definition Classes

   Any

8. def >(that: Interval): Boolean

   Definition Classes

   Ordered

9. def >=(that: Interval): Boolean

   Definition Classes

   Ordered

10. final def asInstanceOf[T0]: T0

    Definition Classes

    Any

11. def clone(): AnyRef

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

12. def compare(other: Interval): Int

    Comparisons between ranges.

    Comparisons between ranges. Order is DESCENDING (i.e. reversed) from by start.

    Definition Classes

    Interval → Ordered

13. def compareTo(that: Interval): Int

    Definition Classes

    Ordered → Comparable

14. def contains(locus: Locus): Boolean

    Definition Classes

    Interval

15. val contigName: ContigName

    Definition Classes

    TestRegion → HasContig

16. val end: Long

    The end position on the genome, *exclusive*.

    The end position on the genome, *exclusive*. Must be non-negative.

    Definition Classes

    TestRegion → Interval

17. final def eq(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

18. def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

19. final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

20. final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

21. def iterator(): Iterator[Long]

    Iterate through elements in the range.

    Iterate through elements in the range.

    Definition Classes

    Interval

22. def length: NumLoci

    Number of elements in the range.

    Number of elements in the range.

    Definition Classes

    Interval

23. final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

24. final def notify(): Unit

    Definition Classes

    AnyRef

25. final def notifyAll(): Unit

    Definition Classes

    AnyRef

26. def overlaps(other: Region): Boolean

    Does the region overlap another reference region

    Does the region overlap another reference region

    other

    another region on the genome

    returns

    True if the the regions overlap

    Definition Classes

    Region

27. def overlapsLocus(locus: Locus, halfWindowSize: Int = 0): Boolean

    Does the region overlap the given locus, with halfWindowSize padding?

    Does the region overlap the given locus, with halfWindowSize padding?

    Definition Classes

    Region

28. def regionStr: String

    Definition Classes

    Region

29. val start: Long

    Start position on the genome, inclusive.

    Start position on the genome, inclusive. Must be non-negative.

    Definition Classes

    TestRegion → Interval

30. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

31. final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

32. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

33. final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )