Package org.obolibrary.robot

Class UnmergeOperation

java.lang.Object

org.obolibrary.robot.UnmergeOperation

public class UnmergeOperation
extends Object

Remove axioms from an ontology.

Author:

Chris Mungall

Constructor Summary

Constructors

Constructor	Description
UnmergeOperation()

Method Summary

Modifier and Type	Method	Description
static org.semanticweb.owlapi.model.OWLOntology	unmerge(List<org.semanticweb.owlapi.model.OWLOntology> ontologies)	Given one or more ontologies, remove all the axioms from the listed ontologies and their import closure from the first ontology, and return the first ontology
static void	unmergeFrom(List<org.semanticweb.owlapi.model.OWLOntology> ontologies, org.semanticweb.owlapi.model.OWLOntology targetOntology)	Given a list of ontologies and a target ontology, remove all the axioms from the listed ontologies and their import closure from the target ontology.
static void	unmergeFrom(List<org.semanticweb.owlapi.model.OWLOntology> ontologies, org.semanticweb.owlapi.model.OWLOntology targetOntology, boolean includeAnnotations)	Given a list of ontologies and a target ontology, remove all the axioms from the listed ontologies and their import closure from the target ontology.
static void	unmergeFrom(org.semanticweb.owlapi.model.OWLOntology ontology, org.semanticweb.owlapi.model.OWLOntology targetOntology)	Given a source ontology and a target ontology, remove all the axioms from the listed ontologies and their import closure from the target ontology.
static void	unmergeFrom(org.semanticweb.owlapi.model.OWLOntology ontology, org.semanticweb.owlapi.model.OWLOntology targetOntology, boolean includeAnnotations)	Given a source ontology and a target ontology, remove all the axioms from the listed ontologies and their import closure from the target ontology.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

UnmergeOperation

public UnmergeOperation()

Method Detail

unmerge

public static org.semanticweb.owlapi.model.OWLOntology unmerge(List<org.semanticweb.owlapi.model.OWLOntology> ontologies)

Given one or more ontologies, remove all the axioms from the listed ontologies and their import closure from the first ontology, and return the first ontology

We use a list instead of a set because OWLAPI judges identity simply by the ontology IRI, even if two ontologies have different axioms.

Parameters:

ontologies - the list of ontologies to merge

Returns:

the first ontology

unmergeFrom

public static void unmergeFrom(org.semanticweb.owlapi.model.OWLOntology ontology,
                               org.semanticweb.owlapi.model.OWLOntology targetOntology)

Given a source ontology and a target ontology, remove all the axioms from the listed ontologies and their import closure from the target ontology.

Parameters:

ontology - the source ontology to unmerge

targetOntology - the ontology to remove axioms from

unmergeFrom

public static void unmergeFrom(List<org.semanticweb.owlapi.model.OWLOntology> ontologies,
                               org.semanticweb.owlapi.model.OWLOntology targetOntology)

Given a list of ontologies and a target ontology, remove all the axioms from the listed ontologies and their import closure from the target ontology.

Parameters:

ontologies - the list of ontologies to unmerge

targetOntology - the ontology to remove axioms from

unmergeFrom

public static void unmergeFrom(org.semanticweb.owlapi.model.OWLOntology ontology,
                               org.semanticweb.owlapi.model.OWLOntology targetOntology,
                               boolean includeAnnotations)

Given a source ontology and a target ontology, remove all the axioms from the listed ontologies and their import closure from the target ontology.

Parameters:

ontology - the ontology to unmerge

targetOntology - the ontology to remove axioms from

includeAnnotations - true if ontology annotations should be merged; annotations on imports are not merged

unmergeFrom

public static void unmergeFrom(List<org.semanticweb.owlapi.model.OWLOntology> ontologies,
                               org.semanticweb.owlapi.model.OWLOntology targetOntology,
                               boolean includeAnnotations)

Given a list of ontologies and a target ontology, remove all the axioms from the listed ontologies and their import closure from the target ontology.

Parameters:

ontologies - the list of ontologies to unmerge

targetOntology - the ontology to remove axioms from

includeAnnotations - true if ontology annotations should be remove