Package org.obolibrary.robot.metrics

Class OntologyMetrics

java.lang.Object

org.obolibrary.robot.metrics.OntologyMetrics

public class OntologyMetrics
extends Object

Constructor Summary

Constructors

Constructor	Description
OntologyMetrics(org.semanticweb.owlapi.model.OWLOntology ontology)
OntologyMetrics(org.semanticweb.owlapi.model.OWLOntology ontology, CURIEShortFormProvider curieShortFormProvider)

Method Summary

Modifier and Type	Method	Description
MeasureResult	getAllMetrics()
MeasureResult	getAllMetrics(String prefix)
MeasureResult	getEssentialMetrics()
MeasureResult	getEssentialMetrics(String prefix)
MeasureResult	getExtendedMetrics()
MeasureResult	getExtendedMetrics(String prefix)
MeasureResult	getExtendedReasonerMetrics(String prefix, org.semanticweb.owlapi.reasoner.OWLReasoner reasoner)
MeasureResult	getExtendedReasonerMetrics(org.semanticweb.owlapi.reasoner.OWLReasoner reasoner)
org.semanticweb.owlapi.model.OWLOntology	getOntology()
MeasureResult	getSimpleReasonerMetrics(String prefix, org.semanticweb.owlapi.reasoner.OWLReasoner reasoner)
MeasureResult	getSimpleReasonerMetrics(org.semanticweb.owlapi.reasoner.OWLReasoner reasoner)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OntologyMetrics

public OntologyMetrics(org.semanticweb.owlapi.model.OWLOntology ontology)

OntologyMetrics

public OntologyMetrics(org.semanticweb.owlapi.model.OWLOntology ontology,
                       CURIEShortFormProvider curieShortFormProvider)

Method Detail

getEssentialMetrics

public MeasureResult getEssentialMetrics()

Returns:

the essential metrics

getExtendedMetrics

public MeasureResult getExtendedMetrics()

Returns:

the extended metrics

getAllMetrics

public MeasureResult getAllMetrics()

Returns:

all metrics

getEssentialMetrics

public MeasureResult getEssentialMetrics(String prefix)

Parameters:

prefix - a prefix to prepend to all the metrics, for example "bfo_"

Returns:

essential metrics

getExtendedMetrics

public MeasureResult getExtendedMetrics(String prefix)

Parameters:

prefix - a prefix to prepend to all the metrics, for example "bfo_"

Returns:

extended metrics

getSimpleReasonerMetrics

public MeasureResult getSimpleReasonerMetrics(org.semanticweb.owlapi.reasoner.OWLReasoner reasoner)

Parameters:

reasoner - the reasoner to use to compute the metric; it is expected that this reasoner has the same ontology loaded as the one used by this class.

Returns:

simple reasoner metrics

getExtendedReasonerMetrics

public MeasureResult getExtendedReasonerMetrics(org.semanticweb.owlapi.reasoner.OWLReasoner reasoner)

Parameters:

reasoner - the reasoner to use to compute the metric; it is expected that this reasoner has the same ontology loaded as the one used by this class.

Returns:

extended reasoner metrics

getSimpleReasonerMetrics

public MeasureResult getSimpleReasonerMetrics(String prefix,
                                              org.semanticweb.owlapi.reasoner.OWLReasoner reasoner)

Parameters:

prefix - a prefix to prepend to all the metrics, for example "bfo_"

reasoner - the reasoner to use to compute the metric; it is expected that this reasoner has the same ontology loaded as the one used by this class.

Returns:

simple reasoner metrics

getExtendedReasonerMetrics

public MeasureResult getExtendedReasonerMetrics(String prefix,
                                                org.semanticweb.owlapi.reasoner.OWLReasoner reasoner)

Parameters:

prefix - a prefix to prepend to all the metrics, for example "bfo_"

reasoner - the reasoner to use to compute the metric; it is expected that this reasoner has the same ontology loaded as the one used by this class.

Returns:

extended reasoner metrics

getAllMetrics

public MeasureResult getAllMetrics(String prefix)

Parameters:

prefix - a prefix to prepend to all the metrics, for example "bfo_"

Returns:

all metrics

getOntology

public org.semanticweb.owlapi.model.OWLOntology getOntology()

Returns:

Ontology used for metrics computation