Package loci.common

Interface Summary

Interface	Description
IRandomAccess	Interface for random access into structures (e.g., files or arrays).
StatusListener	A listener for status updates.
StatusReporter	A simple interface for objects wishing to report their status to listeners.

Class Summary

Class	Description
AbstractNIOHandle	A wrapper for buffered NIO logic that implements the IRandomAccess interface.
ByteArrayHandle	A wrapper for a byte array that implements the IRandomAccess interface.
BZip2Handle	StreamHandle implementation for reading from BZip2-compressed files or byte arrays.
CaseInsensitiveLocation	Case insensitive variant of Location.
CBZip2InputStream	An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.
Constants	Constants that are used within many classes in loci.common.
CRC	A simple class to hold and calculate the CRC for sanity checking the data.
DataTools	A utility class with convenience methods for reading, writing and decoding words.
DateTools	A utility class with convenience methods for working with dates.
DebugTools	A utility class with convenience methods for debugging.
FileHandle	A wrapper for RandomAccessFile that implements the IRandomAccess interface.
GZipHandle	StreamHandle implementation for reading from gzip-compressed files or byte arrays.
IniList	A data structure containing a parsed list of INI key/value tables.
IniParser	A simple parser for INI configuration files.
IniTable	A data structure containing a parsed list of INI key/value tables.
IniWriter	A simple writer for INI configuration files.
Location	Pseudo-extension of java.io.File that supports reading over HTTP (among other things).
Log4jTools	A utility class with convenience methods for log4j.
LogbackTools	A utility class with convenience methods for logback.
NIOByteBufferProvider	Provides a facade to byte buffer allocation that enables FileChannel.map() usage on platforms where it's unlikely to give us problems and heap allocation where it is.
NIOFileHandle	A wrapper for buffered NIO logic that implements the IRandomAccess interface.
NIOInputStream	NIOInputStream provides methods for "intelligent" reading of files and byte arrays.
RandomAccessInputStream	Top-level class for reading from various data sources.
RandomAccessOutputStream	RandomAccessOutputStream provides methods for writing to files and byte arrays.
ReflectedUniverse	Deprecated
Region	A class for representing a rectangular region.
StatusEvent	An event indicating a status update.
StreamHandle	Abstract IRandomAccess implementation for reading from InputStreams and writing to OutputStreams.
URLHandle	Provides random access to URLs using the IRandomAccess interface.
ZipHandle	StreamHandle implementation for reading from Zip-compressed files or byte arrays.

Exception Summary

Exception	Description
HandleException	HandleException is the exception thrown when something goes wrong in one of the custom I/O classes.
ReflectException	ReflectException is the exception thrown when something goes wrong performing a reflected operation with ReflectedUniverse.