Package ome.xml.meta

Interface MetadataStore

All Superinterfaces:
BaseMetadata
All Known Subinterfaces:
IMetadata, OMEXMLMetadata
All Known Implementing Classes:
AbstractOMEXMLMetadata, AggregateMetadata, DummyMetadata, FilterMetadata, OMEXMLMetadataImpl
public interface MetadataStore
extends BaseMetadata
A proxy whose responsibility it is to marshal biological image data into a particular storage medium.

The MetadataStore interface encompasses the metadata that any specific storage medium (file, relational database, etc.) should be expected to store into its backing data model.

The MetadataStore interface goes hand in hand with the MetadataRetrieve interface. Essentially, MetadataRetrieve provides the "getter" methods for a storage medium, and MetadataStore provides the "setter" methods.

Since it often makes sense for a storage medium to implement both interfaces, there is also an IMetadata interface encompassing both MetadataStore and MetadataRetrieve, which reduces the need to cast between object types.

See OMEXMLMetadata for an example implementation.

Important note: It is strongly recommended that applications (e.g., file format readers) using MetadataStore populate information in a linear order. Specifically, iterating over entities from "leftmost" index to "rightmost" index is required for certain MetadataStore implementations such as OMERO's OMEROMetadataStore. For example, when populating Image, Pixels and Plane information, an outer loop should iterate across imageIndex, an inner loop should iterate across pixelsIndex, and an innermost loop should handle planeIndex. For an illustration of the ideal traversal order, see MetadataConverter.convertMetadata(ome.xml.meta.MetadataRetrieve, ome.xml.meta.MetadataStore).

Author:
Chris Allan callan at blackcat.ca, Curtis Rueden ctrueden at wisc.edu

  • Method Summary

    Modifier and Type Method Description
    void createRoot()
    Create root node.
    MetadataRoot getRoot()
    Get the root node of the metadata.
    void setArcAnnotationRef​(java.lang.String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)
    Set the AnnotationRef property of Arc.
    void setArcID​(java.lang.String id, int instrumentIndex, int lightSourceIndex)
    Set the ID property of Arc.
    void setArcLotNumber​(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
    Set the LotNumber property of Arc.
    void setArcManufacturer​(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
    Set the Manufacturer property of Arc.
    void setArcModel​(java.lang.String model, int instrumentIndex, int lightSourceIndex)
    Set the Model property of Arc.
    void setArcPower​(Power power, int instrumentIndex, int lightSourceIndex)
    Set the Power property of Arc.
    void setArcSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
    Set the SerialNumber property of Arc.
    void setArcType​(ArcType type, int instrumentIndex, int lightSourceIndex)
    Set the Type property of Arc.
    void setBinaryFileBinData​(byte[] base64Binary, int fileAnnotationIndex)
    Set the Base64Binary property of BinData.
    void setBinaryFileBinDataBigEndian​(java.lang.Boolean bigEndian, int fileAnnotationIndex)
    Set the BigEndian property of BinData.
    void setBinaryFileBinDataCompression​(Compression compression, int fileAnnotationIndex)
    Set the Compression property of BinData.
    void setBinaryFileBinDataLength​(NonNegativeLong length, int fileAnnotationIndex)
    Set the Length property of BinData.
    void setBinaryFileFileName​(java.lang.String fileName, int fileAnnotationIndex)
    Set the FileName property of BinaryFile.
    void setBinaryFileMIMEType​(java.lang.String mimeType, int fileAnnotationIndex)
    Set the MIMEType property of BinaryFile.
    void setBinaryFileSize​(NonNegativeLong size, int fileAnnotationIndex)
    Set the Size property of BinaryFile.
    void setBinaryOnlyMetadataFile​(java.lang.String metadataFile)
    Set the MetadataFile property of BinaryOnly.
    void setBinaryOnlyUUID​(java.lang.String uuid)
    Set the UUID property of BinaryOnly.
    void setBooleanAnnotationAnnotationRef​(java.lang.String annotation, int booleanAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of BooleanAnnotation.
    void setBooleanAnnotationAnnotator​(java.lang.String annotator, int booleanAnnotationIndex)
    Set the Annotator property of BooleanAnnotation.
    void setBooleanAnnotationDescription​(java.lang.String description, int booleanAnnotationIndex)
    Set the Description property of BooleanAnnotation.
    void setBooleanAnnotationID​(java.lang.String id, int booleanAnnotationIndex)
    Set the ID property of BooleanAnnotation.
    void setBooleanAnnotationNamespace​(java.lang.String namespace, int booleanAnnotationIndex)
    Set the Namespace property of BooleanAnnotation.
    void setBooleanAnnotationValue​(java.lang.Boolean value, int booleanAnnotationIndex)
    Set the Value property of BooleanAnnotation.
    void setChannelAcquisitionMode​(AcquisitionMode acquisitionMode, int imageIndex, int channelIndex)
    Set the AcquisitionMode property of Channel.
    void setChannelAnnotationRef​(java.lang.String annotation, int imageIndex, int channelIndex, int annotationRefIndex)
    Set the AnnotationRef property of Channel.
    void setChannelColor​(Color color, int imageIndex, int channelIndex)
    Set the Color property of Channel.
    void setChannelContrastMethod​(ContrastMethod contrastMethod, int imageIndex, int channelIndex)
    Set the ContrastMethod property of Channel.
    void setChannelEmissionWavelength​(Length emissionWavelength, int imageIndex, int channelIndex)
    Set the EmissionWavelength property of Channel.
    void setChannelExcitationWavelength​(Length excitationWavelength, int imageIndex, int channelIndex)
    Set the ExcitationWavelength property of Channel.
    void setChannelFilterSetRef​(java.lang.String filterSet, int imageIndex, int channelIndex)
    Set the FilterSetRef property of Channel.
    void setChannelFluor​(java.lang.String fluor, int imageIndex, int channelIndex)
    Set the Fluor property of Channel.
    void setChannelID​(java.lang.String id, int imageIndex, int channelIndex)
    Set the ID property of Channel.
    void setChannelIlluminationType​(IlluminationType illuminationType, int imageIndex, int channelIndex)
    Set the IlluminationType property of Channel.
    void setChannelLightSourceSettingsAttenuation​(PercentFraction attenuation, int imageIndex, int channelIndex)
    Set the Attenuation property of LightSourceSettings.
    void setChannelLightSourceSettingsID​(java.lang.String id, int imageIndex, int channelIndex)
    Set the ID property of LightSourceSettings.
    void setChannelLightSourceSettingsWavelength​(Length wavelength, int imageIndex, int channelIndex)
    Set the Wavelength property of LightSourceSettings.
    void setChannelName​(java.lang.String name, int imageIndex, int channelIndex)
    Set the Name property of Channel.
    void setChannelNDFilter​(java.lang.Double ndFilter, int imageIndex, int channelIndex)
    Set the NDFilter property of Channel.
    void setChannelPinholeSize​(Length pinholeSize, int imageIndex, int channelIndex)
    Set the PinholeSize property of Channel.
    void setChannelPockelCellSetting​(java.lang.Integer pockelCellSetting, int imageIndex, int channelIndex)
    Set the PockelCellSetting property of Channel.
    void setChannelSamplesPerPixel​(PositiveInteger samplesPerPixel, int imageIndex, int channelIndex)
    Set the SamplesPerPixel property of Channel.
    void setCommentAnnotationAnnotationRef​(java.lang.String annotation, int commentAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of CommentAnnotation.
    void setCommentAnnotationAnnotator​(java.lang.String annotator, int commentAnnotationIndex)
    Set the Annotator property of CommentAnnotation.
    void setCommentAnnotationDescription​(java.lang.String description, int commentAnnotationIndex)
    Set the Description property of CommentAnnotation.
    void setCommentAnnotationID​(java.lang.String id, int commentAnnotationIndex)
    Set the ID property of CommentAnnotation.
    void setCommentAnnotationNamespace​(java.lang.String namespace, int commentAnnotationIndex)
    Set the Namespace property of CommentAnnotation.
    void setCommentAnnotationValue​(java.lang.String value, int commentAnnotationIndex)
    Set the Value property of CommentAnnotation.
    default void setCreator​(java.lang.String creator)
    Set the Creator associated with this collection of metadata.
    void setDatasetAnnotationRef​(java.lang.String annotation, int datasetIndex, int annotationRefIndex)
    Set the AnnotationRef property of Dataset.
    void setDatasetDescription​(java.lang.String description, int datasetIndex)
    Set the Description property of Dataset.
    void setDatasetExperimenterGroupRef​(java.lang.String experimenterGroup, int datasetIndex)
    Set the ExperimenterGroupRef property of Dataset.
    void setDatasetExperimenterRef​(java.lang.String experimenter, int datasetIndex)
    Set the ExperimenterRef property of Dataset.
    void setDatasetID​(java.lang.String id, int datasetIndex)
    Set the ID property of Dataset.
    void setDatasetImageRef​(java.lang.String image, int datasetIndex, int imageRefIndex)
    Set the ImageRef property of Dataset.
    void setDatasetName​(java.lang.String name, int datasetIndex)
    Set the Name property of Dataset.
    void setDetectorAmplificationGain​(java.lang.Double amplificationGain, int instrumentIndex, int detectorIndex)
    Set the AmplificationGain property of Detector.
    void setDetectorAnnotationRef​(java.lang.String annotation, int instrumentIndex, int detectorIndex, int annotationRefIndex)
    Set the AnnotationRef property of Detector.
    void setDetectorGain​(java.lang.Double gain, int instrumentIndex, int detectorIndex)
    Set the Gain property of Detector.
    void setDetectorID​(java.lang.String id, int instrumentIndex, int detectorIndex)
    Set the ID property of Detector.
    void setDetectorLotNumber​(java.lang.String lotNumber, int instrumentIndex, int detectorIndex)
    Set the LotNumber property of Detector.
    void setDetectorManufacturer​(java.lang.String manufacturer, int instrumentIndex, int detectorIndex)
    Set the Manufacturer property of Detector.
    void setDetectorModel​(java.lang.String model, int instrumentIndex, int detectorIndex)
    Set the Model property of Detector.
    void setDetectorOffset​(java.lang.Double offset, int instrumentIndex, int detectorIndex)
    Set the Offset property of Detector.
    void setDetectorSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int detectorIndex)
    Set the SerialNumber property of Detector.
    void setDetectorSettingsBinning​(Binning binning, int imageIndex, int channelIndex)
    Set the Binning property of DetectorSettings.
    void setDetectorSettingsGain​(java.lang.Double gain, int imageIndex, int channelIndex)
    Set the Gain property of DetectorSettings.
    void setDetectorSettingsID​(java.lang.String id, int imageIndex, int channelIndex)
    Set the ID property of DetectorSettings.
    void setDetectorSettingsIntegration​(PositiveInteger integration, int imageIndex, int channelIndex)
    Set the Integration property of DetectorSettings.
    void setDetectorSettingsOffset​(java.lang.Double offset, int imageIndex, int channelIndex)
    Set the Offset property of DetectorSettings.
    void setDetectorSettingsReadOutRate​(Frequency readOutRate, int imageIndex, int channelIndex)
    Set the ReadOutRate property of DetectorSettings.
    void setDetectorSettingsVoltage​(ElectricPotential voltage, int imageIndex, int channelIndex)
    Set the Voltage property of DetectorSettings.
    void setDetectorSettingsZoom​(java.lang.Double zoom, int imageIndex, int channelIndex)
    Set the Zoom property of DetectorSettings.
    void setDetectorType​(DetectorType type, int instrumentIndex, int detectorIndex)
    Set the Type property of Detector.
    void setDetectorVoltage​(ElectricPotential voltage, int instrumentIndex, int detectorIndex)
    Set the Voltage property of Detector.
    void setDetectorZoom​(java.lang.Double zoom, int instrumentIndex, int detectorIndex)
    Set the Zoom property of Detector.
    void setDichroicAnnotationRef​(java.lang.String annotation, int instrumentIndex, int dichroicIndex, int annotationRefIndex)
    Set the AnnotationRef property of Dichroic.
    void setDichroicID​(java.lang.String id, int instrumentIndex, int dichroicIndex)
    Set the ID property of Dichroic.
    void setDichroicLotNumber​(java.lang.String lotNumber, int instrumentIndex, int dichroicIndex)
    Set the LotNumber property of Dichroic.
    void setDichroicManufacturer​(java.lang.String manufacturer, int instrumentIndex, int dichroicIndex)
    Set the Manufacturer property of Dichroic.
    void setDichroicModel​(java.lang.String model, int instrumentIndex, int dichroicIndex)
    Set the Model property of Dichroic.
    void setDichroicSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int dichroicIndex)
    Set the SerialNumber property of Dichroic.
    void setDoubleAnnotationAnnotationRef​(java.lang.String annotation, int doubleAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of DoubleAnnotation.
    void setDoubleAnnotationAnnotator​(java.lang.String annotator, int doubleAnnotationIndex)
    Set the Annotator property of DoubleAnnotation.
    void setDoubleAnnotationDescription​(java.lang.String description, int doubleAnnotationIndex)
    Set the Description property of DoubleAnnotation.
    void setDoubleAnnotationID​(java.lang.String id, int doubleAnnotationIndex)
    Set the ID property of DoubleAnnotation.
    void setDoubleAnnotationNamespace​(java.lang.String namespace, int doubleAnnotationIndex)
    Set the Namespace property of DoubleAnnotation.
    void setDoubleAnnotationValue​(java.lang.Double value, int doubleAnnotationIndex)
    Set the Value property of DoubleAnnotation.
    void setEllipseAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
    Set the AnnotationRef property of Ellipse.
    void setEllipseFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
    Set the FillColor property of Ellipse.
    void setEllipseFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
    Set the FillRule property of Ellipse.
    void setEllipseFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
    Set the FontFamily property of Ellipse.
    void setEllipseFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
    Set the FontSize property of Ellipse.
    void setEllipseFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
    Set the FontStyle property of Ellipse.
    void setEllipseID​(java.lang.String id, int ROIIndex, int shapeIndex)
    Set the ID property of Ellipse.
    void setEllipseLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
    Set the Locked property of Ellipse.
    void setEllipseRadiusX​(java.lang.Double radiusX, int ROIIndex, int shapeIndex)
    Set the RadiusX property of Ellipse.
    void setEllipseRadiusY​(java.lang.Double radiusY, int ROIIndex, int shapeIndex)
    Set the RadiusY property of Ellipse.
    void setEllipseStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
    Set the StrokeColor property of Ellipse.
    void setEllipseStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
    Set the StrokeDashArray property of Ellipse.
    void setEllipseStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
    Set the StrokeWidth property of Ellipse.
    void setEllipseText​(java.lang.String text, int ROIIndex, int shapeIndex)
    Set the Text property of Ellipse.
    void setEllipseTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
    Set the TheC property of Ellipse.
    void setEllipseTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
    Set the TheT property of Ellipse.
    void setEllipseTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
    Set the TheZ property of Ellipse.
    void setEllipseTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
    Set the Transform property of Ellipse.
    void setEllipseX​(java.lang.Double x, int ROIIndex, int shapeIndex)
    Set the X property of Ellipse.
    void setEllipseY​(java.lang.Double y, int ROIIndex, int shapeIndex)
    Set the Y property of Ellipse.
    void setExperimentDescription​(java.lang.String description, int experimentIndex)
    Set the Description property of Experiment.
    void setExperimenterAnnotationRef​(java.lang.String annotation, int experimenterIndex, int annotationRefIndex)
    Set the AnnotationRef property of Experimenter.
    void setExperimenterEmail​(java.lang.String email, int experimenterIndex)
    Set the Email property of Experimenter.
    void setExperimenterFirstName​(java.lang.String firstName, int experimenterIndex)
    Set the FirstName property of Experimenter.
    void setExperimenterGroupAnnotationRef​(java.lang.String annotation, int experimenterGroupIndex, int annotationRefIndex)
    Set the AnnotationRef property of ExperimenterGroup.
    void setExperimenterGroupDescription​(java.lang.String description, int experimenterGroupIndex)
    Set the Description property of ExperimenterGroup.
    void setExperimenterGroupExperimenterRef​(java.lang.String experimenter, int experimenterGroupIndex, int experimenterRefIndex)
    Set the ExperimenterRef property of ExperimenterGroup.
    void setExperimenterGroupID​(java.lang.String id, int experimenterGroupIndex)
    Set the ID property of ExperimenterGroup.
    void setExperimenterGroupLeader​(java.lang.String leader, int experimenterGroupIndex, int leaderIndex)
    Set the Leader property of ExperimenterGroup.
    void setExperimenterGroupName​(java.lang.String name, int experimenterGroupIndex)
    Set the Name property of ExperimenterGroup.
    void setExperimenterID​(java.lang.String id, int experimenterIndex)
    Set the ID property of Experimenter.
    void setExperimenterInstitution​(java.lang.String institution, int experimenterIndex)
    Set the Institution property of Experimenter.
    void setExperimenterLastName​(java.lang.String lastName, int experimenterIndex)
    Set the LastName property of Experimenter.
    void setExperimenterMiddleName​(java.lang.String middleName, int experimenterIndex)
    Set the MiddleName property of Experimenter.
    void setExperimenterUserName​(java.lang.String userName, int experimenterIndex)
    Set the UserName property of Experimenter.
    void setExperimentExperimenterRef​(java.lang.String experimenter, int experimentIndex)
    Set the ExperimenterRef property of Experiment.
    void setExperimentID​(java.lang.String id, int experimentIndex)
    Set the ID property of Experiment.
    void setExperimentType​(ExperimentType type, int experimentIndex)
    Set the Type property of Experiment.
    void setFilamentAnnotationRef​(java.lang.String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)
    Set the AnnotationRef property of Filament.
    void setFilamentID​(java.lang.String id, int instrumentIndex, int lightSourceIndex)
    Set the ID property of Filament.
    void setFilamentLotNumber​(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
    Set the LotNumber property of Filament.
    void setFilamentManufacturer​(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
    Set the Manufacturer property of Filament.
    void setFilamentModel​(java.lang.String model, int instrumentIndex, int lightSourceIndex)
    Set the Model property of Filament.
    void setFilamentPower​(Power power, int instrumentIndex, int lightSourceIndex)
    Set the Power property of Filament.
    void setFilamentSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
    Set the SerialNumber property of Filament.
    void setFilamentType​(FilamentType type, int instrumentIndex, int lightSourceIndex)
    Set the Type property of Filament.
    void setFileAnnotationAnnotationRef​(java.lang.String annotation, int fileAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of FileAnnotation.
    void setFileAnnotationAnnotator​(java.lang.String annotator, int fileAnnotationIndex)
    Set the Annotator property of FileAnnotation.
    void setFileAnnotationDescription​(java.lang.String description, int fileAnnotationIndex)
    Set the Description property of FileAnnotation.
    void setFileAnnotationID​(java.lang.String id, int fileAnnotationIndex)
    Set the ID property of FileAnnotation.
    void setFileAnnotationNamespace​(java.lang.String namespace, int fileAnnotationIndex)
    Set the Namespace property of FileAnnotation.
    void setFilterAnnotationRef​(java.lang.String annotation, int instrumentIndex, int filterIndex, int annotationRefIndex)
    Set the AnnotationRef property of Filter.
    void setFilterFilterWheel​(java.lang.String filterWheel, int instrumentIndex, int filterIndex)
    Set the FilterWheel property of Filter.
    void setFilterID​(java.lang.String id, int instrumentIndex, int filterIndex)
    Set the ID property of Filter.
    void setFilterLotNumber​(java.lang.String lotNumber, int instrumentIndex, int filterIndex)
    Set the LotNumber property of Filter.
    void setFilterManufacturer​(java.lang.String manufacturer, int instrumentIndex, int filterIndex)
    Set the Manufacturer property of Filter.
    void setFilterModel​(java.lang.String model, int instrumentIndex, int filterIndex)
    Set the Model property of Filter.
    void setFilterSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int filterIndex)
    Set the SerialNumber property of Filter.
    void setFilterSetDichroicRef​(java.lang.String dichroic, int instrumentIndex, int filterSetIndex)
    Set the DichroicRef property of FilterSet.
    void setFilterSetEmissionFilterRef​(java.lang.String emissionFilter, int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)
    Set the EmissionFilterRef property of FilterSet.
    void setFilterSetExcitationFilterRef​(java.lang.String excitationFilter, int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)
    Set the ExcitationFilterRef property of FilterSet.
    void setFilterSetID​(java.lang.String id, int instrumentIndex, int filterSetIndex)
    Set the ID property of FilterSet.
    void setFilterSetLotNumber​(java.lang.String lotNumber, int instrumentIndex, int filterSetIndex)
    Set the LotNumber property of FilterSet.
    void setFilterSetManufacturer​(java.lang.String manufacturer, int instrumentIndex, int filterSetIndex)
    Set the Manufacturer property of FilterSet.
    void setFilterSetModel​(java.lang.String model, int instrumentIndex, int filterSetIndex)
    Set the Model property of FilterSet.
    void setFilterSetSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int filterSetIndex)
    Set the SerialNumber property of FilterSet.
    void setFilterType​(FilterType type, int instrumentIndex, int filterIndex)
    Set the Type property of Filter.
    void setFolderAnnotationRef​(java.lang.String annotation, int folderIndex, int annotationRefIndex)
    Set the AnnotationRef property of Folder.
    void setFolderDescription​(java.lang.String description, int folderIndex)
    Set the Description property of Folder.
    void setFolderFolderRef​(java.lang.String folder, int folderIndex, int folderRefIndex)
    Set the FolderRef property of Folder.
    void setFolderID​(java.lang.String id, int folderIndex)
    Set the ID property of Folder.
    void setFolderImageRef​(java.lang.String image, int folderIndex, int imageRefIndex)
    Set the ImageRef property of Folder.
    void setFolderName​(java.lang.String name, int folderIndex)
    Set the Name property of Folder.
    void setFolderROIRef​(java.lang.String roi, int folderIndex, int ROIRefIndex)
    Set the ROIRef property of Folder.
    void setGenericExcitationSourceAnnotationRef​(java.lang.String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)
    Set the AnnotationRef property of GenericExcitationSource.
    void setGenericExcitationSourceID​(java.lang.String id, int instrumentIndex, int lightSourceIndex)
    Set the ID property of GenericExcitationSource.
    void setGenericExcitationSourceLotNumber​(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
    Set the LotNumber property of GenericExcitationSource.
    void setGenericExcitationSourceManufacturer​(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
    Set the Manufacturer property of GenericExcitationSource.
    void setGenericExcitationSourceMap​(java.util.List<MapPair> map, int instrumentIndex, int lightSourceIndex)
    Set the MapAnnotation values of a GenericExcitationSource.
    void setGenericExcitationSourceModel​(java.lang.String model, int instrumentIndex, int lightSourceIndex)
    Set the Model property of GenericExcitationSource.
    void setGenericExcitationSourcePower​(Power power, int instrumentIndex, int lightSourceIndex)
    Set the Power property of GenericExcitationSource.
    void setGenericExcitationSourceSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
    Set the SerialNumber property of GenericExcitationSource.
    void setImageAcquisitionDate​(Timestamp acquisitionDate, int imageIndex)
    Set the AcquisitionDate property of Image.
    void setImageAnnotationRef​(java.lang.String annotation, int imageIndex, int annotationRefIndex)
    Set the AnnotationRef property of Image.
    void setImageDescription​(java.lang.String description, int imageIndex)
    Set the Description property of Image.
    void setImageExperimenterGroupRef​(java.lang.String experimenterGroup, int imageIndex)
    Set the ExperimenterGroupRef property of Image.
    void setImageExperimenterRef​(java.lang.String experimenter, int imageIndex)
    Set the ExperimenterRef property of Image.
    void setImageExperimentRef​(java.lang.String experiment, int imageIndex)
    Set the ExperimentRef property of Image.
    void setImageID​(java.lang.String id, int imageIndex)
    Set the ID property of Image.
    void setImageInstrumentRef​(java.lang.String instrument, int imageIndex)
    Set the InstrumentRef property of Image.
    void setImageMicrobeamManipulationRef​(java.lang.String microbeamManipulation, int imageIndex, int microbeamManipulationRefIndex)
    Set the MicrobeamManipulationRef property of Image.
    void setImageName​(java.lang.String name, int imageIndex)
    Set the Name property of Image.
    void setImageROIRef​(java.lang.String roi, int imageIndex, int ROIRefIndex)
    Set the ROIRef property of Image.
    void setImagingEnvironmentAirPressure​(Pressure airPressure, int imageIndex)
    Set the AirPressure property of ImagingEnvironment.
    void setImagingEnvironmentCO2Percent​(PercentFraction co2Percent, int imageIndex)
    Set the CO2Percent property of ImagingEnvironment.
    void setImagingEnvironmentHumidity​(PercentFraction humidity, int imageIndex)
    Set the Humidity property of ImagingEnvironment.
    void setImagingEnvironmentMap​(java.util.List<MapPair> map, int imageIndex)
    Set the MapAnnotation values of an ImagingEnvironment.
    void setImagingEnvironmentTemperature​(Temperature temperature, int imageIndex)
    Set the Temperature property of ImagingEnvironment.
    void setInstrumentAnnotationRef​(java.lang.String annotation, int instrumentIndex, int annotationRefIndex)
    Set the AnnotationRef property of Instrument.
    void setInstrumentID​(java.lang.String id, int instrumentIndex)
    Set the ID property of Instrument.
    void setLabelAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
    Set the AnnotationRef property of Label.
    void setLabelFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
    Set the FillColor property of Label.
    void setLabelFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
    Set the FillRule property of Label.
    void setLabelFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
    Set the FontFamily property of Label.
    void setLabelFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
    Set the FontSize property of Label.
    void setLabelFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
    Set the FontStyle property of Label.
    void setLabelID​(java.lang.String id, int ROIIndex, int shapeIndex)
    Set the ID property of Label.
    void setLabelLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
    Set the Locked property of Label.
    void setLabelStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
    Set the StrokeColor property of Label.
    void setLabelStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
    Set the StrokeDashArray property of Label.
    void setLabelStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
    Set the StrokeWidth property of Label.
    void setLabelText​(java.lang.String text, int ROIIndex, int shapeIndex)
    Set the Text property of Label.
    void setLabelTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
    Set the TheC property of Label.
    void setLabelTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
    Set the TheT property of Label.
    void setLabelTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
    Set the TheZ property of Label.
    void setLabelTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
    Set the Transform property of Label.
    void setLabelX​(java.lang.Double x, int ROIIndex, int shapeIndex)
    Set the X property of Label.
    void setLabelY​(java.lang.Double y, int ROIIndex, int shapeIndex)
    Set the Y property of Label.
    void setLaserAnnotationRef​(java.lang.String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)
    Set the AnnotationRef property of Laser.
    void setLaserFrequencyMultiplication​(PositiveInteger frequencyMultiplication, int instrumentIndex, int lightSourceIndex)
    Set the FrequencyMultiplication property of Laser.
    void setLaserID​(java.lang.String id, int instrumentIndex, int lightSourceIndex)
    Set the ID property of Laser.
    void setLaserLaserMedium​(LaserMedium laserMedium, int instrumentIndex, int lightSourceIndex)
    Set the LaserMedium property of Laser.
    void setLaserLotNumber​(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
    Set the LotNumber property of Laser.
    void setLaserManufacturer​(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
    Set the Manufacturer property of Laser.
    void setLaserModel​(java.lang.String model, int instrumentIndex, int lightSourceIndex)
    Set the Model property of Laser.
    void setLaserPockelCell​(java.lang.Boolean pockelCell, int instrumentIndex, int lightSourceIndex)
    Set the PockelCell property of Laser.
    void setLaserPower​(Power power, int instrumentIndex, int lightSourceIndex)
    Set the Power property of Laser.
    void setLaserPulse​(Pulse pulse, int instrumentIndex, int lightSourceIndex)
    Set the Pulse property of Laser.
    void setLaserPump​(java.lang.String pump, int instrumentIndex, int lightSourceIndex)
    Set the Pump property of Laser.
    void setLaserRepetitionRate​(Frequency repetitionRate, int instrumentIndex, int lightSourceIndex)
    Set the RepetitionRate property of Laser.
    void setLaserSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
    Set the SerialNumber property of Laser.
    void setLaserTuneable​(java.lang.Boolean tuneable, int instrumentIndex, int lightSourceIndex)
    Set the Tuneable property of Laser.
    void setLaserType​(LaserType type, int instrumentIndex, int lightSourceIndex)
    Set the Type property of Laser.
    void setLaserWavelength​(Length wavelength, int instrumentIndex, int lightSourceIndex)
    Set the Wavelength property of Laser.
    void setLightEmittingDiodeAnnotationRef​(java.lang.String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)
    Set the AnnotationRef property of LightEmittingDiode.
    void setLightEmittingDiodeID​(java.lang.String id, int instrumentIndex, int lightSourceIndex)
    Set the ID property of LightEmittingDiode.
    void setLightEmittingDiodeLotNumber​(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
    Set the LotNumber property of LightEmittingDiode.
    void setLightEmittingDiodeManufacturer​(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
    Set the Manufacturer property of LightEmittingDiode.
    void setLightEmittingDiodeModel​(java.lang.String model, int instrumentIndex, int lightSourceIndex)
    Set the Model property of LightEmittingDiode.
    void setLightEmittingDiodePower​(Power power, int instrumentIndex, int lightSourceIndex)
    Set the Power property of LightEmittingDiode.
    void setLightEmittingDiodeSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
    Set the SerialNumber property of LightEmittingDiode.
    void setLightPathAnnotationRef​(java.lang.String annotation, int imageIndex, int channelIndex, int annotationRefIndex)
    Set the AnnotationRef property of LightPath.
    void setLightPathDichroicRef​(java.lang.String dichroic, int imageIndex, int channelIndex)
    Set the DichroicRef property of LightPath.
    void setLightPathEmissionFilterRef​(java.lang.String emissionFilter, int imageIndex, int channelIndex, int emissionFilterRefIndex)
    Set the EmissionFilterRef property of LightPath.
    void setLightPathExcitationFilterRef​(java.lang.String excitationFilter, int imageIndex, int channelIndex, int excitationFilterRefIndex)
    Set the ExcitationFilterRef property of LightPath.
    void setLineAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
    Set the AnnotationRef property of Line.
    void setLineFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
    Set the FillColor property of Line.
    void setLineFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
    Set the FillRule property of Line.
    void setLineFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
    Set the FontFamily property of Line.
    void setLineFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
    Set the FontSize property of Line.
    void setLineFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
    Set the FontStyle property of Line.
    void setLineID​(java.lang.String id, int ROIIndex, int shapeIndex)
    Set the ID property of Line.
    void setLineLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
    Set the Locked property of Line.
    void setLineMarkerEnd​(Marker markerEnd, int ROIIndex, int shapeIndex)
    Set the MarkerEnd property of Line.
    void setLineMarkerStart​(Marker markerStart, int ROIIndex, int shapeIndex)
    Set the MarkerStart property of Line.
    void setLineStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
    Set the StrokeColor property of Line.
    void setLineStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
    Set the StrokeDashArray property of Line.
    void setLineStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
    Set the StrokeWidth property of Line.
    void setLineText​(java.lang.String text, int ROIIndex, int shapeIndex)
    Set the Text property of Line.
    void setLineTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
    Set the TheC property of Line.
    void setLineTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
    Set the TheT property of Line.
    void setLineTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
    Set the TheZ property of Line.
    void setLineTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
    Set the Transform property of Line.
    void setLineX1​(java.lang.Double x1, int ROIIndex, int shapeIndex)
    Set the X1 property of Line.
    void setLineX2​(java.lang.Double x2, int ROIIndex, int shapeIndex)
    Set the X2 property of Line.
    void setLineY1​(java.lang.Double y1, int ROIIndex, int shapeIndex)
    Set the Y1 property of Line.
    void setLineY2​(java.lang.Double y2, int ROIIndex, int shapeIndex)
    Set the Y2 property of Line.
    void setListAnnotationAnnotationRef​(java.lang.String annotation, int listAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of ListAnnotation.
    void setListAnnotationAnnotator​(java.lang.String annotator, int listAnnotationIndex)
    Set the Annotator property of ListAnnotation.
    void setListAnnotationDescription​(java.lang.String description, int listAnnotationIndex)
    Set the Description property of ListAnnotation.
    void setListAnnotationID​(java.lang.String id, int listAnnotationIndex)
    Set the ID property of ListAnnotation.
    void setListAnnotationNamespace​(java.lang.String namespace, int listAnnotationIndex)
    Set the Namespace property of ListAnnotation.
    void setLongAnnotationAnnotationRef​(java.lang.String annotation, int longAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of LongAnnotation.
    void setLongAnnotationAnnotator​(java.lang.String annotator, int longAnnotationIndex)
    Set the Annotator property of LongAnnotation.
    void setLongAnnotationDescription​(java.lang.String description, int longAnnotationIndex)
    Set the Description property of LongAnnotation.
    void setLongAnnotationID​(java.lang.String id, int longAnnotationIndex)
    Set the ID property of LongAnnotation.
    void setLongAnnotationNamespace​(java.lang.String namespace, int longAnnotationIndex)
    Set the Namespace property of LongAnnotation.
    void setLongAnnotationValue​(java.lang.Long value, int longAnnotationIndex)
    Set the Value property of LongAnnotation.
    void setMapAnnotationAnnotationRef​(java.lang.String annotation, int mapAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of MapAnnotation.
    void setMapAnnotationAnnotator​(java.lang.String annotator, int mapAnnotationIndex)
    Set the Annotator property of MapAnnotation.
    void setMapAnnotationDescription​(java.lang.String description, int mapAnnotationIndex)
    Set the Description property of MapAnnotation.
    void setMapAnnotationID​(java.lang.String id, int mapAnnotationIndex)
    Set the ID property of MapAnnotation.
    void setMapAnnotationNamespace​(java.lang.String namespace, int mapAnnotationIndex)
    Set the Namespace property of MapAnnotation.
    void setMapAnnotationValue​(java.util.List<MapPair> value, int mapAnnotationIndex)
    Set the values of a MapAnnotation.
    void setMaskAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
    Set the AnnotationRef property of Mask.
    void setMaskBinData​(byte[] base64Binary, int ROIIndex, int shapeIndex)
    Set the Base64Binary property of BinData.
    void setMaskBinDataBigEndian​(java.lang.Boolean bigEndian, int ROIIndex, int shapeIndex)
    Set the BigEndian property of BinData.
    void setMaskBinDataCompression​(Compression compression, int ROIIndex, int shapeIndex)
    Set the Compression property of BinData.
    void setMaskBinDataLength​(NonNegativeLong length, int ROIIndex, int shapeIndex)
    Set the Length property of BinData.
    void setMaskFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
    Set the FillColor property of Mask.
    void setMaskFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
    Set the FillRule property of Mask.
    void setMaskFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
    Set the FontFamily property of Mask.
    void setMaskFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
    Set the FontSize property of Mask.
    void setMaskFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
    Set the FontStyle property of Mask.
    void setMaskHeight​(java.lang.Double height, int ROIIndex, int shapeIndex)
    Set the Height property of Mask.
    void setMaskID​(java.lang.String id, int ROIIndex, int shapeIndex)
    Set the ID property of Mask.
    void setMaskLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
    Set the Locked property of Mask.
    void setMaskStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
    Set the StrokeColor property of Mask.
    void setMaskStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
    Set the StrokeDashArray property of Mask.
    void setMaskStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
    Set the StrokeWidth property of Mask.
    void setMaskText​(java.lang.String text, int ROIIndex, int shapeIndex)
    Set the Text property of Mask.
    void setMaskTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
    Set the TheC property of Mask.
    void setMaskTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
    Set the TheT property of Mask.
    void setMaskTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
    Set the TheZ property of Mask.
    void setMaskTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
    Set the Transform property of Mask.
    void setMaskWidth​(java.lang.Double width, int ROIIndex, int shapeIndex)
    Set the Width property of Mask.
    void setMaskX​(java.lang.Double x, int ROIIndex, int shapeIndex)
    Set the X property of Mask.
    void setMaskY​(java.lang.Double y, int ROIIndex, int shapeIndex)
    Set the Y property of Mask.
    void setMicrobeamManipulationDescription​(java.lang.String description, int experimentIndex, int microbeamManipulationIndex)
    Set the Description property of MicrobeamManipulation.
    void setMicrobeamManipulationExperimenterRef​(java.lang.String experimenter, int experimentIndex, int microbeamManipulationIndex)
    Set the ExperimenterRef property of MicrobeamManipulation.
    void setMicrobeamManipulationID​(java.lang.String id, int experimentIndex, int microbeamManipulationIndex)
    Set the ID property of MicrobeamManipulation.
    void setMicrobeamManipulationLightSourceSettingsAttenuation​(PercentFraction attenuation, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)
    Set the Attenuation property of LightSourceSettings.
    void setMicrobeamManipulationLightSourceSettingsID​(java.lang.String id, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)
    Set the ID property of LightSourceSettings.
    void setMicrobeamManipulationLightSourceSettingsWavelength​(Length wavelength, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)
    Set the Wavelength property of LightSourceSettings.
    void setMicrobeamManipulationROIRef​(java.lang.String roi, int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)
    Set the ROIRef property of MicrobeamManipulation.
    void setMicrobeamManipulationType​(MicrobeamManipulationType type, int experimentIndex, int microbeamManipulationIndex)
    Set the Type property of MicrobeamManipulation.
    void setMicroscopeLotNumber​(java.lang.String lotNumber, int instrumentIndex)
    Set the LotNumber property of Microscope.
    void setMicroscopeManufacturer​(java.lang.String manufacturer, int instrumentIndex)
    Set the Manufacturer property of Microscope.
    void setMicroscopeModel​(java.lang.String model, int instrumentIndex)
    Set the Model property of Microscope.
    void setMicroscopeSerialNumber​(java.lang.String serialNumber, int instrumentIndex)
    Set the SerialNumber property of Microscope.
    void setMicroscopeType​(MicroscopeType type, int instrumentIndex)
    Set the Type property of Microscope.
    void setObjectiveAnnotationRef​(java.lang.String annotation, int instrumentIndex, int objectiveIndex, int annotationRefIndex)
    Set the AnnotationRef property of Objective.
    void setObjectiveCalibratedMagnification​(java.lang.Double calibratedMagnification, int instrumentIndex, int objectiveIndex)
    Set the CalibratedMagnification property of Objective.
    void setObjectiveCorrection​(Correction correction, int instrumentIndex, int objectiveIndex)
    Set the Correction property of Objective.
    void setObjectiveID​(java.lang.String id, int instrumentIndex, int objectiveIndex)
    Set the ID property of Objective.
    void setObjectiveImmersion​(Immersion immersion, int instrumentIndex, int objectiveIndex)
    Set the Immersion property of Objective.
    void setObjectiveIris​(java.lang.Boolean iris, int instrumentIndex, int objectiveIndex)
    Set the Iris property of Objective.
    void setObjectiveLensNA​(java.lang.Double lensNA, int instrumentIndex, int objectiveIndex)
    Set the LensNA property of Objective.
    void setObjectiveLotNumber​(java.lang.String lotNumber, int instrumentIndex, int objectiveIndex)
    Set the LotNumber property of Objective.
    void setObjectiveManufacturer​(java.lang.String manufacturer, int instrumentIndex, int objectiveIndex)
    Set the Manufacturer property of Objective.
    void setObjectiveModel​(java.lang.String model, int instrumentIndex, int objectiveIndex)
    Set the Model property of Objective.
    void setObjectiveNominalMagnification​(java.lang.Double nominalMagnification, int instrumentIndex, int objectiveIndex)
    Set the NominalMagnification property of Objective.
    void setObjectiveSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int objectiveIndex)
    Set the SerialNumber property of Objective.
    void setObjectiveSettingsCorrectionCollar​(java.lang.Double correctionCollar, int imageIndex)
    Set the CorrectionCollar property of ObjectiveSettings.
    void setObjectiveSettingsID​(java.lang.String id, int imageIndex)
    Set the ID property of ObjectiveSettings.
    void setObjectiveSettingsMedium​(Medium medium, int imageIndex)
    Set the Medium property of ObjectiveSettings.
    void setObjectiveSettingsRefractiveIndex​(java.lang.Double refractiveIndex, int imageIndex)
    Set the RefractiveIndex property of ObjectiveSettings.
    void setObjectiveWorkingDistance​(Length workingDistance, int instrumentIndex, int objectiveIndex)
    Set the WorkingDistance property of Objective.
    void setPixelsBigEndian​(java.lang.Boolean bigEndian, int imageIndex)
    Set the BigEndian property of Pixels.
    void setPixelsBinData​(byte[] base64Binary, int imageIndex, int binDataIndex)
    Set the Base64Binary property of BinData.
    void setPixelsBinDataBigEndian​(java.lang.Boolean bigEndian, int imageIndex, int binDataIndex)
    Set the BigEndian property of BinData.
    void setPixelsBinDataCompression​(Compression compression, int imageIndex, int binDataIndex)
    Set the Compression property of BinData.
    void setPixelsBinDataLength​(NonNegativeLong length, int imageIndex, int binDataIndex)
    Set the Length property of BinData.
    void setPixelsDimensionOrder​(DimensionOrder dimensionOrder, int imageIndex)
    Set the DimensionOrder property of Pixels.
    void setPixelsID​(java.lang.String id, int imageIndex)
    Set the ID property of Pixels.
    void setPixelsInterleaved​(java.lang.Boolean interleaved, int imageIndex)
    Set the Interleaved property of Pixels.
    void setPixelsPhysicalSizeX​(Length physicalSizeX, int imageIndex)
    Set the PhysicalSizeX property of Pixels.
    void setPixelsPhysicalSizeY​(Length physicalSizeY, int imageIndex)
    Set the PhysicalSizeY property of Pixels.
    void setPixelsPhysicalSizeZ​(Length physicalSizeZ, int imageIndex)
    Set the PhysicalSizeZ property of Pixels.
    void setPixelsSignificantBits​(PositiveInteger significantBits, int imageIndex)
    Set the SignificantBits property of Pixels.
    void setPixelsSizeC​(PositiveInteger sizeC, int imageIndex)
    Set the SizeC property of Pixels.
    void setPixelsSizeT​(PositiveInteger sizeT, int imageIndex)
    Set the SizeT property of Pixels.
    void setPixelsSizeX​(PositiveInteger sizeX, int imageIndex)
    Set the SizeX property of Pixels.
    void setPixelsSizeY​(PositiveInteger sizeY, int imageIndex)
    Set the SizeY property of Pixels.
    void setPixelsSizeZ​(PositiveInteger sizeZ, int imageIndex)
    Set the SizeZ property of Pixels.
    void setPixelsTimeIncrement​(Time timeIncrement, int imageIndex)
    Set the TimeIncrement property of Pixels.
    void setPixelsType​(PixelType type, int imageIndex)
    Set the Type property of Pixels.
    void setPlaneAnnotationRef​(java.lang.String annotation, int imageIndex, int planeIndex, int annotationRefIndex)
    Set the AnnotationRef property of Plane.
    void setPlaneDeltaT​(Time deltaT, int imageIndex, int planeIndex)
    Set the DeltaT property of Plane.
    void setPlaneExposureTime​(Time exposureTime, int imageIndex, int planeIndex)
    Set the ExposureTime property of Plane.
    void setPlaneHashSHA1​(java.lang.String hashSHA1, int imageIndex, int planeIndex)
    Set the HashSHA1 property of Plane.
    void setPlanePositionX​(Length positionX, int imageIndex, int planeIndex)
    Set the PositionX property of Plane.
    void setPlanePositionY​(Length positionY, int imageIndex, int planeIndex)
    Set the PositionY property of Plane.
    void setPlanePositionZ​(Length positionZ, int imageIndex, int planeIndex)
    Set the PositionZ property of Plane.
    void setPlaneTheC​(NonNegativeInteger theC, int imageIndex, int planeIndex)
    Set the TheC property of Plane.
    void setPlaneTheT​(NonNegativeInteger theT, int imageIndex, int planeIndex)
    Set the TheT property of Plane.
    void setPlaneTheZ​(NonNegativeInteger theZ, int imageIndex, int planeIndex)
    Set the TheZ property of Plane.
    void setPlateAcquisitionAnnotationRef​(java.lang.String annotation, int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)
    Set the AnnotationRef property of PlateAcquisition.
    void setPlateAcquisitionDescription​(java.lang.String description, int plateIndex, int plateAcquisitionIndex)
    Set the Description property of PlateAcquisition.
    void setPlateAcquisitionEndTime​(Timestamp endTime, int plateIndex, int plateAcquisitionIndex)
    Set the EndTime property of PlateAcquisition.
    void setPlateAcquisitionID​(java.lang.String id, int plateIndex, int plateAcquisitionIndex)
    Set the ID property of PlateAcquisition.
    void setPlateAcquisitionMaximumFieldCount​(PositiveInteger maximumFieldCount, int plateIndex, int plateAcquisitionIndex)
    Set the MaximumFieldCount property of PlateAcquisition.
    void setPlateAcquisitionName​(java.lang.String name, int plateIndex, int plateAcquisitionIndex)
    Set the Name property of PlateAcquisition.
    void setPlateAcquisitionStartTime​(Timestamp startTime, int plateIndex, int plateAcquisitionIndex)
    Set the StartTime property of PlateAcquisition.
    void setPlateAcquisitionWellSampleRef​(java.lang.String wellSample, int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)
    Set the WellSampleRef property of PlateAcquisition.
    void setPlateAnnotationRef​(java.lang.String annotation, int plateIndex, int annotationRefIndex)
    Set the AnnotationRef property of Plate.
    void setPlateColumnNamingConvention​(NamingConvention columnNamingConvention, int plateIndex)
    Set the ColumnNamingConvention property of Plate.
    void setPlateColumns​(PositiveInteger columns, int plateIndex)
    Set the Columns property of Plate.
    void setPlateDescription​(java.lang.String description, int plateIndex)
    Set the Description property of Plate.
    void setPlateExternalIdentifier​(java.lang.String externalIdentifier, int plateIndex)
    Set the ExternalIdentifier property of Plate.
    void setPlateFieldIndex​(NonNegativeInteger fieldIndex, int plateIndex)
    Set the FieldIndex property of Plate.
    void setPlateID​(java.lang.String id, int plateIndex)
    Set the ID property of Plate.
    void setPlateName​(java.lang.String name, int plateIndex)
    Set the Name property of Plate.
    void setPlateRowNamingConvention​(NamingConvention rowNamingConvention, int plateIndex)
    Set the RowNamingConvention property of Plate.
    void setPlateRows​(PositiveInteger rows, int plateIndex)
    Set the Rows property of Plate.
    void setPlateStatus​(java.lang.String status, int plateIndex)
    Set the Status property of Plate.
    void setPlateWellOriginX​(Length wellOriginX, int plateIndex)
    Set the WellOriginX property of Plate.
    void setPlateWellOriginY​(Length wellOriginY, int plateIndex)
    Set the WellOriginY property of Plate.
    void setPointAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
    Set the AnnotationRef property of Point.
    void setPointFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
    Set the FillColor property of Point.
    void setPointFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
    Set the FillRule property of Point.
    void setPointFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
    Set the FontFamily property of Point.
    void setPointFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
    Set the FontSize property of Point.
    void setPointFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
    Set the FontStyle property of Point.
    void setPointID​(java.lang.String id, int ROIIndex, int shapeIndex)
    Set the ID property of Point.
    void setPointLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
    Set the Locked property of Point.
    void setPointStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
    Set the StrokeColor property of Point.
    void setPointStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
    Set the StrokeDashArray property of Point.
    void setPointStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
    Set the StrokeWidth property of Point.
    void setPointText​(java.lang.String text, int ROIIndex, int shapeIndex)
    Set the Text property of Point.
    void setPointTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
    Set the TheC property of Point.
    void setPointTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
    Set the TheT property of Point.
    void setPointTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
    Set the TheZ property of Point.
    void setPointTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
    Set the Transform property of Point.
    void setPointX​(java.lang.Double x, int ROIIndex, int shapeIndex)
    Set the X property of Point.
    void setPointY​(java.lang.Double y, int ROIIndex, int shapeIndex)
    Set the Y property of Point.
    void setPolygonAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
    Set the AnnotationRef property of Polygon.
    void setPolygonFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
    Set the FillColor property of Polygon.
    void setPolygonFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
    Set the FillRule property of Polygon.
    void setPolygonFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
    Set the FontFamily property of Polygon.
    void setPolygonFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
    Set the FontSize property of Polygon.
    void setPolygonFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
    Set the FontStyle property of Polygon.
    void setPolygonID​(java.lang.String id, int ROIIndex, int shapeIndex)
    Set the ID property of Polygon.
    void setPolygonLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
    Set the Locked property of Polygon.
    void setPolygonPoints​(java.lang.String points, int ROIIndex, int shapeIndex)
    Set the Points property of Polygon.
    void setPolygonStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
    Set the StrokeColor property of Polygon.
    void setPolygonStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
    Set the StrokeDashArray property of Polygon.
    void setPolygonStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
    Set the StrokeWidth property of Polygon.
    void setPolygonText​(java.lang.String text, int ROIIndex, int shapeIndex)
    Set the Text property of Polygon.
    void setPolygonTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
    Set the TheC property of Polygon.
    void setPolygonTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
    Set the TheT property of Polygon.
    void setPolygonTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
    Set the TheZ property of Polygon.
    void setPolygonTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
    Set the Transform property of Polygon.
    void setPolylineAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
    Set the AnnotationRef property of Polyline.
    void setPolylineFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
    Set the FillColor property of Polyline.
    void setPolylineFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
    Set the FillRule property of Polyline.
    void setPolylineFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
    Set the FontFamily property of Polyline.
    void setPolylineFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
    Set the FontSize property of Polyline.
    void setPolylineFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
    Set the FontStyle property of Polyline.
    void setPolylineID​(java.lang.String id, int ROIIndex, int shapeIndex)
    Set the ID property of Polyline.
    void setPolylineLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
    Set the Locked property of Polyline.
    void setPolylineMarkerEnd​(Marker markerEnd, int ROIIndex, int shapeIndex)
    Set the MarkerEnd property of Polyline.
    void setPolylineMarkerStart​(Marker markerStart, int ROIIndex, int shapeIndex)
    Set the MarkerStart property of Polyline.
    void setPolylinePoints​(java.lang.String points, int ROIIndex, int shapeIndex)
    Set the Points property of Polyline.
    void setPolylineStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
    Set the StrokeColor property of Polyline.
    void setPolylineStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
    Set the StrokeDashArray property of Polyline.
    void setPolylineStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
    Set the StrokeWidth property of Polyline.
    void setPolylineText​(java.lang.String text, int ROIIndex, int shapeIndex)
    Set the Text property of Polyline.
    void setPolylineTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
    Set the TheC property of Polyline.
    void setPolylineTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
    Set the TheT property of Polyline.
    void setPolylineTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
    Set the TheZ property of Polyline.
    void setPolylineTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
    Set the Transform property of Polyline.
    void setProjectAnnotationRef​(java.lang.String annotation, int projectIndex, int annotationRefIndex)
    Set the AnnotationRef property of Project.
    void setProjectDatasetRef​(java.lang.String dataset, int projectIndex, int datasetRefIndex)
    Set the DatasetRef property of Project.
    void setProjectDescription​(java.lang.String description, int projectIndex)
    Set the Description property of Project.
    void setProjectExperimenterGroupRef​(java.lang.String experimenterGroup, int projectIndex)
    Set the ExperimenterGroupRef property of Project.
    void setProjectExperimenterRef​(java.lang.String experimenter, int projectIndex)
    Set the ExperimenterRef property of Project.
    void setProjectID​(java.lang.String id, int projectIndex)
    Set the ID property of Project.
    void setProjectName​(java.lang.String name, int projectIndex)
    Set the Name property of Project.
    void setReagentAnnotationRef​(java.lang.String annotation, int screenIndex, int reagentIndex, int annotationRefIndex)
    Set the AnnotationRef property of Reagent.
    void setReagentDescription​(java.lang.String description, int screenIndex, int reagentIndex)
    Set the Description property of Reagent.
    void setReagentID​(java.lang.String id, int screenIndex, int reagentIndex)
    Set the ID property of Reagent.
    void setReagentName​(java.lang.String name, int screenIndex, int reagentIndex)
    Set the Name property of Reagent.
    void setReagentReagentIdentifier​(java.lang.String reagentIdentifier, int screenIndex, int reagentIndex)
    Set the ReagentIdentifier property of Reagent.
    void setRectangleAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
    Set the AnnotationRef property of Rectangle.
    void setRectangleFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
    Set the FillColor property of Rectangle.
    void setRectangleFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
    Set the FillRule property of Rectangle.
    void setRectangleFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
    Set the FontFamily property of Rectangle.
    void setRectangleFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
    Set the FontSize property of Rectangle.
    void setRectangleFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
    Set the FontStyle property of Rectangle.
    void setRectangleHeight​(java.lang.Double height, int ROIIndex, int shapeIndex)
    Set the Height property of Rectangle.
    void setRectangleID​(java.lang.String id, int ROIIndex, int shapeIndex)
    Set the ID property of Rectangle.
    void setRectangleLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
    Set the Locked property of Rectangle.
    void setRectangleStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
    Set the StrokeColor property of Rectangle.
    void setRectangleStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
    Set the StrokeDashArray property of Rectangle.
    void setRectangleStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
    Set the StrokeWidth property of Rectangle.
    void setRectangleText​(java.lang.String text, int ROIIndex, int shapeIndex)
    Set the Text property of Rectangle.
    void setRectangleTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
    Set the TheC property of Rectangle.
    void setRectangleTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
    Set the TheT property of Rectangle.
    void setRectangleTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
    Set the TheZ property of Rectangle.
    void setRectangleTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
    Set the Transform property of Rectangle.
    void setRectangleWidth​(java.lang.Double width, int ROIIndex, int shapeIndex)
    Set the Width property of Rectangle.
    void setRectangleX​(java.lang.Double x, int ROIIndex, int shapeIndex)
    Set the X property of Rectangle.
    void setRectangleY​(java.lang.Double y, int ROIIndex, int shapeIndex)
    Set the Y property of Rectangle.
    void setRightsRightsHeld​(java.lang.String rightsHeld)
    Set the RightsHeld property of Rights.
    void setRightsRightsHolder​(java.lang.String rightsHolder)
    Set the RightsHolder property of Rights.
    void setROIAnnotationRef​(java.lang.String annotation, int ROIIndex, int annotationRefIndex)
    Set the AnnotationRef property of ROI.
    void setROIDescription​(java.lang.String description, int ROIIndex)
    Set the Description property of ROI.
    void setROIID​(java.lang.String id, int ROIIndex)
    Set the ID property of ROI.
    void setROIName​(java.lang.String name, int ROIIndex)
    Set the Name property of ROI.
    void setRoot​(MetadataRoot root)
    Set the root node of the metadata.
    void setScreenAnnotationRef​(java.lang.String annotation, int screenIndex, int annotationRefIndex)
    Set the AnnotationRef property of Screen.
    void setScreenDescription​(java.lang.String description, int screenIndex)
    Set the Description property of Screen.
    void setScreenID​(java.lang.String id, int screenIndex)
    Set the ID property of Screen.
    void setScreenName​(java.lang.String name, int screenIndex)
    Set the Name property of Screen.
    void setScreenPlateRef​(java.lang.String plate, int screenIndex, int plateRefIndex)
    Set the PlateRef property of Screen.
    void setScreenProtocolDescription​(java.lang.String protocolDescription, int screenIndex)
    Set the ProtocolDescription property of Screen.
    void setScreenProtocolIdentifier​(java.lang.String protocolIdentifier, int screenIndex)
    Set the ProtocolIdentifier property of Screen.
    void setScreenReagentSetDescription​(java.lang.String reagentSetDescription, int screenIndex)
    Set the ReagentSetDescription property of Screen.
    void setScreenReagentSetIdentifier​(java.lang.String reagentSetIdentifier, int screenIndex)
    Set the ReagentSetIdentifier property of Screen.
    void setScreenType​(java.lang.String type, int screenIndex)
    Set the Type property of Screen.
    void setStageLabelName​(java.lang.String name, int imageIndex)
    Set the Name property of StageLabel.
    void setStageLabelX​(Length x, int imageIndex)
    Set the X property of StageLabel.
    void setStageLabelY​(Length y, int imageIndex)
    Set the Y property of StageLabel.
    void setStageLabelZ​(Length z, int imageIndex)
    Set the Z property of StageLabel.
    void setTagAnnotationAnnotationRef​(java.lang.String annotation, int tagAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of TagAnnotation.
    void setTagAnnotationAnnotator​(java.lang.String annotator, int tagAnnotationIndex)
    Set the Annotator property of TagAnnotation.
    void setTagAnnotationDescription​(java.lang.String description, int tagAnnotationIndex)
    Set the Description property of TagAnnotation.
    void setTagAnnotationID​(java.lang.String id, int tagAnnotationIndex)
    Set the ID property of TagAnnotation.
    void setTagAnnotationNamespace​(java.lang.String namespace, int tagAnnotationIndex)
    Set the Namespace property of TagAnnotation.
    void setTagAnnotationValue​(java.lang.String value, int tagAnnotationIndex)
    Set the Value property of TagAnnotation.
    void setTermAnnotationAnnotationRef​(java.lang.String annotation, int termAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of TermAnnotation.
    void setTermAnnotationAnnotator​(java.lang.String annotator, int termAnnotationIndex)
    Set the Annotator property of TermAnnotation.
    void setTermAnnotationDescription​(java.lang.String description, int termAnnotationIndex)
    Set the Description property of TermAnnotation.
    void setTermAnnotationID​(java.lang.String id, int termAnnotationIndex)
    Set the ID property of TermAnnotation.
    void setTermAnnotationNamespace​(java.lang.String namespace, int termAnnotationIndex)
    Set the Namespace property of TermAnnotation.
    void setTermAnnotationValue​(java.lang.String value, int termAnnotationIndex)
    Set the Value property of TermAnnotation.
    void setTiffDataFirstC​(NonNegativeInteger firstC, int imageIndex, int tiffDataIndex)
    Set the FirstC property of TiffData.
    void setTiffDataFirstT​(NonNegativeInteger firstT, int imageIndex, int tiffDataIndex)
    Set the FirstT property of TiffData.
    void setTiffDataFirstZ​(NonNegativeInteger firstZ, int imageIndex, int tiffDataIndex)
    Set the FirstZ property of TiffData.
    void setTiffDataIFD​(NonNegativeInteger ifd, int imageIndex, int tiffDataIndex)
    Set the IFD property of TiffData.
    void setTiffDataPlaneCount​(NonNegativeInteger planeCount, int imageIndex, int tiffDataIndex)
    Set the PlaneCount property of TiffData.
    void setTimestampAnnotationAnnotationRef​(java.lang.String annotation, int timestampAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of TimestampAnnotation.
    void setTimestampAnnotationAnnotator​(java.lang.String annotator, int timestampAnnotationIndex)
    Set the Annotator property of TimestampAnnotation.
    void setTimestampAnnotationDescription​(java.lang.String description, int timestampAnnotationIndex)
    Set the Description property of TimestampAnnotation.
    void setTimestampAnnotationID​(java.lang.String id, int timestampAnnotationIndex)
    Set the ID property of TimestampAnnotation.
    void setTimestampAnnotationNamespace​(java.lang.String namespace, int timestampAnnotationIndex)
    Set the Namespace property of TimestampAnnotation.
    void setTimestampAnnotationValue​(Timestamp value, int timestampAnnotationIndex)
    Set the Value property of TimestampAnnotation.
    void setTransmittanceRangeCutIn​(Length cutIn, int instrumentIndex, int filterIndex)
    Set the CutIn property of TransmittanceRange.
    void setTransmittanceRangeCutInTolerance​(Length cutInTolerance, int instrumentIndex, int filterIndex)
    Set the CutInTolerance property of TransmittanceRange.
    void setTransmittanceRangeCutOut​(Length cutOut, int instrumentIndex, int filterIndex)
    Set the CutOut property of TransmittanceRange.
    void setTransmittanceRangeCutOutTolerance​(Length cutOutTolerance, int instrumentIndex, int filterIndex)
    Set the CutOutTolerance property of TransmittanceRange.
    void setTransmittanceRangeTransmittance​(PercentFraction transmittance, int instrumentIndex, int filterIndex)
    Set the Transmittance property of TransmittanceRange.
    void setUUID​(java.lang.String uuid)
    Set the UUID associated with this collection of metadata.
    void setUUIDFileName​(java.lang.String fileName, int imageIndex, int tiffDataIndex)
    Set the FileName property of UUID.
    void setUUIDValue​(java.lang.String value, int imageIndex, int tiffDataIndex)
    Set the text value of UUID.
    void setWellAnnotationRef​(java.lang.String annotation, int plateIndex, int wellIndex, int annotationRefIndex)
    Set the AnnotationRef property of Well.
    void setWellColor​(Color color, int plateIndex, int wellIndex)
    Set the Color property of Well.
    void setWellColumn​(NonNegativeInteger column, int plateIndex, int wellIndex)
    Set the Column property of Well.
    void setWellExternalDescription​(java.lang.String externalDescription, int plateIndex, int wellIndex)
    Set the ExternalDescription property of Well.
    void setWellExternalIdentifier​(java.lang.String externalIdentifier, int plateIndex, int wellIndex)
    Set the ExternalIdentifier property of Well.
    void setWellID​(java.lang.String id, int plateIndex, int wellIndex)
    Set the ID property of Well.
    void setWellReagentRef​(java.lang.String reagent, int plateIndex, int wellIndex)
    Set the ReagentRef property of Well.
    void setWellRow​(NonNegativeInteger row, int plateIndex, int wellIndex)
    Set the Row property of Well.
    void setWellSampleID​(java.lang.String id, int plateIndex, int wellIndex, int wellSampleIndex)
    Set the ID property of WellSample.
    void setWellSampleImageRef​(java.lang.String image, int plateIndex, int wellIndex, int wellSampleIndex)
    Set the ImageRef property of WellSample.
    void setWellSampleIndex​(NonNegativeInteger index, int plateIndex, int wellIndex, int wellSampleIndex)
    Set the Index property of WellSample.
    void setWellSamplePositionX​(Length positionX, int plateIndex, int wellIndex, int wellSampleIndex)
    Set the PositionX property of WellSample.
    void setWellSamplePositionY​(Length positionY, int plateIndex, int wellIndex, int wellSampleIndex)
    Set the PositionY property of WellSample.
    void setWellSampleTimepoint​(Timestamp timepoint, int plateIndex, int wellIndex, int wellSampleIndex)
    Set the Timepoint property of WellSample.
    void setWellType​(java.lang.String type, int plateIndex, int wellIndex)
    Set the Type property of Well.
    void setXMLAnnotationAnnotationRef​(java.lang.String annotation, int XMLAnnotationIndex, int annotationRefIndex)
    Set the AnnotationRef property of XMLAnnotation.
    void setXMLAnnotationAnnotator​(java.lang.String annotator, int XMLAnnotationIndex)
    Set the Annotator property of XMLAnnotation.
    void setXMLAnnotationDescription​(java.lang.String description, int XMLAnnotationIndex)
    Set the Description property of XMLAnnotation.
    void setXMLAnnotationID​(java.lang.String id, int XMLAnnotationIndex)
    Set the ID property of XMLAnnotation.
    void setXMLAnnotationNamespace​(java.lang.String namespace, int XMLAnnotationIndex)
    Set the Namespace property of XMLAnnotation.
    void setXMLAnnotationValue​(java.lang.String value, int XMLAnnotationIndex)
    Set the Value property of XMLAnnotation.

  • Method Details

    • createRoot

      void createRoot()
      Create root node. The action taken here is specific to the concrete metadata implementation.

    • getRoot

      MetadataRoot getRoot()
      Get the root node of the metadata. Note that the root node type will be specific to the concrete metadata implementation.
      Returns:
      the root node.

    • setRoot

      void setRoot​(MetadataRoot root)
      Set the root node of the metadata. Note that the root node type will be specific to the concrete metadata implementation. An exception will be thrown if the root node is of an incompatible type.
      Parameters:
      root - the root node.

    • setMapAnnotationValue

      void setMapAnnotationValue​(java.util.List<MapPair> value, int mapAnnotationIndex)
      Set the values of a MapAnnotation.
      Parameters:
      value - the MapAnnotation values to set.
      mapAnnotationIndex - the MapAnnotation index.

    • setGenericExcitationSourceMap

      void setGenericExcitationSourceMap​(java.util.List<MapPair> map, int instrumentIndex, int lightSourceIndex)
      Set the MapAnnotation values of a GenericExcitationSource.
      Parameters:
      map - the MapAnnotation values to set.
      instrumentIndex - the Instrument index.

    • setImagingEnvironmentMap

      void setImagingEnvironmentMap​(java.util.List<MapPair> map, int imageIndex)
      Set the MapAnnotation values of an ImagingEnvironment.
      Parameters:
      map - the MapAnnotation values to set.
      imageIndex - the Image index.

    • setUUID

      void setUUID​(java.lang.String uuid)
      Set the UUID associated with this collection of metadata.
      Parameters:
      uuid - the UUID to set.

    • setCreator

      default void setCreator​(java.lang.String creator)
      Set the Creator associated with this collection of metadata.
      Parameters:
      creator - the Creator to set.

    • setArcAnnotationRef

      void setArcAnnotationRef​(java.lang.String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)
      Set the AnnotationRef property of Arc.
      Parameters:
      annotation - AnnotationRef to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.
      annotationRefIndex - AnnotationRef index (unused).

    • setArcID

      void setArcID​(java.lang.String id, int instrumentIndex, int lightSourceIndex)
      Set the ID property of Arc.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setArcLotNumber

      void setArcLotNumber​(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
      Set the LotNumber property of Arc.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setArcManufacturer

      void setArcManufacturer​(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
      Set the Manufacturer property of Arc.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setArcModel

      void setArcModel​(java.lang.String model, int instrumentIndex, int lightSourceIndex)
      Set the Model property of Arc.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setArcPower

      void setArcPower​(Power power, int instrumentIndex, int lightSourceIndex)
      Set the Power property of Arc.
      Parameters:
      power - Power to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setArcSerialNumber

      void setArcSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
      Set the SerialNumber property of Arc.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setArcType

      void setArcType​(ArcType type, int instrumentIndex, int lightSourceIndex)
      Set the Type property of Arc.
      Parameters:
      type - Type to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setBinaryFileBinData

      void setBinaryFileBinData​(byte[] base64Binary, int fileAnnotationIndex)
      Set the Base64Binary property of BinData.
      Parameters:
      base64Binary - Base64Binary to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setMaskBinData

      void setMaskBinData​(byte[] base64Binary, int ROIIndex, int shapeIndex)
      Set the Base64Binary property of BinData.
      Parameters:
      base64Binary - Base64Binary to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPixelsBinData

      void setPixelsBinData​(byte[] base64Binary, int imageIndex, int binDataIndex)
      Set the Base64Binary property of BinData.
      Parameters:
      base64Binary - Base64Binary to set.
      imageIndex - the Image index.
      binDataIndex - the BinData index.

    • setBinaryFileBinDataBigEndian

      void setBinaryFileBinDataBigEndian​(java.lang.Boolean bigEndian, int fileAnnotationIndex)
      Set the BigEndian property of BinData.
      Parameters:
      bigEndian - BigEndian to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setMaskBinDataBigEndian

      void setMaskBinDataBigEndian​(java.lang.Boolean bigEndian, int ROIIndex, int shapeIndex)
      Set the BigEndian property of BinData.
      Parameters:
      bigEndian - BigEndian to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPixelsBinDataBigEndian

      void setPixelsBinDataBigEndian​(java.lang.Boolean bigEndian, int imageIndex, int binDataIndex)
      Set the BigEndian property of BinData.
      Parameters:
      bigEndian - BigEndian to set.
      imageIndex - the Image index.
      binDataIndex - the BinData index.

    • setBinaryFileBinDataCompression

      void setBinaryFileBinDataCompression​(Compression compression, int fileAnnotationIndex)
      Set the Compression property of BinData.
      Parameters:
      compression - Compression to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setMaskBinDataCompression

      void setMaskBinDataCompression​(Compression compression, int ROIIndex, int shapeIndex)
      Set the Compression property of BinData.
      Parameters:
      compression - Compression to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPixelsBinDataCompression

      void setPixelsBinDataCompression​(Compression compression, int imageIndex, int binDataIndex)
      Set the Compression property of BinData.
      Parameters:
      compression - Compression to set.
      imageIndex - the Image index.
      binDataIndex - the BinData index.

    • setBinaryFileBinDataLength

      void setBinaryFileBinDataLength​(NonNegativeLong length, int fileAnnotationIndex)
      Set the Length property of BinData.
      Parameters:
      length - Length to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setMaskBinDataLength

      void setMaskBinDataLength​(NonNegativeLong length, int ROIIndex, int shapeIndex)
      Set the Length property of BinData.
      Parameters:
      length - Length to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPixelsBinDataLength

      void setPixelsBinDataLength​(NonNegativeLong length, int imageIndex, int binDataIndex)
      Set the Length property of BinData.
      Parameters:
      length - Length to set.
      imageIndex - the Image index.
      binDataIndex - the BinData index.

    • setBinaryFileFileName

      void setBinaryFileFileName​(java.lang.String fileName, int fileAnnotationIndex)
      Set the FileName property of BinaryFile.
      Parameters:
      fileName - FileName to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setBinaryFileMIMEType

      void setBinaryFileMIMEType​(java.lang.String mimeType, int fileAnnotationIndex)
      Set the MIMEType property of BinaryFile.
      Parameters:
      mimeType - MIMEType to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setBinaryFileSize

      void setBinaryFileSize​(NonNegativeLong size, int fileAnnotationIndex)
      Set the Size property of BinaryFile.
      Parameters:
      size - Size to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setBinaryOnlyMetadataFile

      void setBinaryOnlyMetadataFile​(java.lang.String metadataFile)
      Set the MetadataFile property of BinaryOnly.
      Parameters:
      metadataFile - MetadataFile to set.

    • setBinaryOnlyUUID

      void setBinaryOnlyUUID​(java.lang.String uuid)
      Set the UUID property of BinaryOnly.
      Parameters:
      uuid - UUID to set.

    • setBooleanAnnotationAnnotationRef

      void setBooleanAnnotationAnnotationRef​(java.lang.String annotation, int booleanAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of BooleanAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      booleanAnnotationIndex - the BooleanAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setBooleanAnnotationAnnotator

      void setBooleanAnnotationAnnotator​(java.lang.String annotator, int booleanAnnotationIndex)
      Set the Annotator property of BooleanAnnotation.
      Parameters:
      annotator - Annotator to set.
      booleanAnnotationIndex - the BooleanAnnotation index.

    • setBooleanAnnotationDescription

      void setBooleanAnnotationDescription​(java.lang.String description, int booleanAnnotationIndex)
      Set the Description property of BooleanAnnotation.
      Parameters:
      description - Description to set.
      booleanAnnotationIndex - the BooleanAnnotation index.

    • setBooleanAnnotationID

      void setBooleanAnnotationID​(java.lang.String id, int booleanAnnotationIndex)
      Set the ID property of BooleanAnnotation.
      Parameters:
      id - ID to set.
      booleanAnnotationIndex - the BooleanAnnotation index.

    • setBooleanAnnotationNamespace

      void setBooleanAnnotationNamespace​(java.lang.String namespace, int booleanAnnotationIndex)
      Set the Namespace property of BooleanAnnotation.
      Parameters:
      namespace - Namespace to set.
      booleanAnnotationIndex - the BooleanAnnotation index.

    • setBooleanAnnotationValue

      void setBooleanAnnotationValue​(java.lang.Boolean value, int booleanAnnotationIndex)
      Set the Value property of BooleanAnnotation.
      Parameters:
      value - Value to set.
      booleanAnnotationIndex - the BooleanAnnotation index.

    • setChannelAcquisitionMode

      void setChannelAcquisitionMode​(AcquisitionMode acquisitionMode, int imageIndex, int channelIndex)
      Set the AcquisitionMode property of Channel.
      Parameters:
      acquisitionMode - AcquisitionMode to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelAnnotationRef

      void setChannelAnnotationRef​(java.lang.String annotation, int imageIndex, int channelIndex, int annotationRefIndex)
      Set the AnnotationRef property of Channel.
      Parameters:
      annotation - AnnotationRef to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.
      annotationRefIndex - AnnotationRef index (unused).

    • setChannelColor

      void setChannelColor​(Color color, int imageIndex, int channelIndex)
      Set the Color property of Channel.
      Parameters:
      color - Color to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelContrastMethod

      void setChannelContrastMethod​(ContrastMethod contrastMethod, int imageIndex, int channelIndex)
      Set the ContrastMethod property of Channel.
      Parameters:
      contrastMethod - ContrastMethod to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelEmissionWavelength

      void setChannelEmissionWavelength​(Length emissionWavelength, int imageIndex, int channelIndex)
      Set the EmissionWavelength property of Channel.
      Parameters:
      emissionWavelength - EmissionWavelength to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelExcitationWavelength

      void setChannelExcitationWavelength​(Length excitationWavelength, int imageIndex, int channelIndex)
      Set the ExcitationWavelength property of Channel.
      Parameters:
      excitationWavelength - ExcitationWavelength to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelFilterSetRef

      void setChannelFilterSetRef​(java.lang.String filterSet, int imageIndex, int channelIndex)
      Set the FilterSetRef property of Channel.
      Parameters:
      filterSet - FilterSetRef to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelFluor

      void setChannelFluor​(java.lang.String fluor, int imageIndex, int channelIndex)
      Set the Fluor property of Channel.
      Parameters:
      fluor - Fluor to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelID

      void setChannelID​(java.lang.String id, int imageIndex, int channelIndex)
      Set the ID property of Channel.
      Parameters:
      id - ID to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelIlluminationType

      void setChannelIlluminationType​(IlluminationType illuminationType, int imageIndex, int channelIndex)
      Set the IlluminationType property of Channel.
      Parameters:
      illuminationType - IlluminationType to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelNDFilter

      void setChannelNDFilter​(java.lang.Double ndFilter, int imageIndex, int channelIndex)
      Set the NDFilter property of Channel.
      Parameters:
      ndFilter - NDFilter to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelName

      void setChannelName​(java.lang.String name, int imageIndex, int channelIndex)
      Set the Name property of Channel.
      Parameters:
      name - Name to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelPinholeSize

      void setChannelPinholeSize​(Length pinholeSize, int imageIndex, int channelIndex)
      Set the PinholeSize property of Channel.
      Parameters:
      pinholeSize - PinholeSize to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelPockelCellSetting

      void setChannelPockelCellSetting​(java.lang.Integer pockelCellSetting, int imageIndex, int channelIndex)
      Set the PockelCellSetting property of Channel.
      Parameters:
      pockelCellSetting - PockelCellSetting to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setChannelSamplesPerPixel

      void setChannelSamplesPerPixel​(PositiveInteger samplesPerPixel, int imageIndex, int channelIndex)
      Set the SamplesPerPixel property of Channel.
      Parameters:
      samplesPerPixel - SamplesPerPixel to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setCommentAnnotationAnnotationRef

      void setCommentAnnotationAnnotationRef​(java.lang.String annotation, int commentAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of CommentAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      commentAnnotationIndex - the CommentAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setCommentAnnotationAnnotator

      void setCommentAnnotationAnnotator​(java.lang.String annotator, int commentAnnotationIndex)
      Set the Annotator property of CommentAnnotation.
      Parameters:
      annotator - Annotator to set.
      commentAnnotationIndex - the CommentAnnotation index.

    • setCommentAnnotationDescription

      void setCommentAnnotationDescription​(java.lang.String description, int commentAnnotationIndex)
      Set the Description property of CommentAnnotation.
      Parameters:
      description - Description to set.
      commentAnnotationIndex - the CommentAnnotation index.

    • setCommentAnnotationID

      void setCommentAnnotationID​(java.lang.String id, int commentAnnotationIndex)
      Set the ID property of CommentAnnotation.
      Parameters:
      id - ID to set.
      commentAnnotationIndex - the CommentAnnotation index.

    • setCommentAnnotationNamespace

      void setCommentAnnotationNamespace​(java.lang.String namespace, int commentAnnotationIndex)
      Set the Namespace property of CommentAnnotation.
      Parameters:
      namespace - Namespace to set.
      commentAnnotationIndex - the CommentAnnotation index.

    • setCommentAnnotationValue

      void setCommentAnnotationValue​(java.lang.String value, int commentAnnotationIndex)
      Set the Value property of CommentAnnotation.
      Parameters:
      value - Value to set.
      commentAnnotationIndex - the CommentAnnotation index.

    • setDatasetAnnotationRef

      void setDatasetAnnotationRef​(java.lang.String annotation, int datasetIndex, int annotationRefIndex)
      Set the AnnotationRef property of Dataset.
      Parameters:
      annotation - AnnotationRef to set.
      datasetIndex - the Dataset index.
      annotationRefIndex - AnnotationRef index (unused).

    • setDatasetDescription

      void setDatasetDescription​(java.lang.String description, int datasetIndex)
      Set the Description property of Dataset.
      Parameters:
      description - Description to set.
      datasetIndex - the Dataset index.

    • setDatasetExperimenterGroupRef

      void setDatasetExperimenterGroupRef​(java.lang.String experimenterGroup, int datasetIndex)
      Set the ExperimenterGroupRef property of Dataset.
      Parameters:
      experimenterGroup - ExperimenterGroupRef to set.
      datasetIndex - the Dataset index.

    • setDatasetExperimenterRef

      void setDatasetExperimenterRef​(java.lang.String experimenter, int datasetIndex)
      Set the ExperimenterRef property of Dataset.
      Parameters:
      experimenter - ExperimenterRef to set.
      datasetIndex - the Dataset index.

    • setDatasetID

      void setDatasetID​(java.lang.String id, int datasetIndex)
      Set the ID property of Dataset.
      Parameters:
      id - ID to set.
      datasetIndex - the Dataset index.

    • setDatasetImageRef

      void setDatasetImageRef​(java.lang.String image, int datasetIndex, int imageRefIndex)
      Set the ImageRef property of Dataset.
      Parameters:
      image - ImageRef to set.
      datasetIndex - the Dataset index.
      imageRefIndex - ImageRef index (unused).

    • setDatasetName

      void setDatasetName​(java.lang.String name, int datasetIndex)
      Set the Name property of Dataset.
      Parameters:
      name - Name to set.
      datasetIndex - the Dataset index.

    • setDetectorAmplificationGain

      void setDetectorAmplificationGain​(java.lang.Double amplificationGain, int instrumentIndex, int detectorIndex)
      Set the AmplificationGain property of Detector.
      Parameters:
      amplificationGain - AmplificationGain to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorAnnotationRef

      void setDetectorAnnotationRef​(java.lang.String annotation, int instrumentIndex, int detectorIndex, int annotationRefIndex)
      Set the AnnotationRef property of Detector.
      Parameters:
      annotation - AnnotationRef to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.
      annotationRefIndex - AnnotationRef index (unused).

    • setDetectorGain

      void setDetectorGain​(java.lang.Double gain, int instrumentIndex, int detectorIndex)
      Set the Gain property of Detector.
      Parameters:
      gain - Gain to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorID

      void setDetectorID​(java.lang.String id, int instrumentIndex, int detectorIndex)
      Set the ID property of Detector.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorLotNumber

      void setDetectorLotNumber​(java.lang.String lotNumber, int instrumentIndex, int detectorIndex)
      Set the LotNumber property of Detector.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorManufacturer

      void setDetectorManufacturer​(java.lang.String manufacturer, int instrumentIndex, int detectorIndex)
      Set the Manufacturer property of Detector.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorModel

      void setDetectorModel​(java.lang.String model, int instrumentIndex, int detectorIndex)
      Set the Model property of Detector.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorOffset

      void setDetectorOffset​(java.lang.Double offset, int instrumentIndex, int detectorIndex)
      Set the Offset property of Detector.
      Parameters:
      offset - Offset to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorSerialNumber

      void setDetectorSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int detectorIndex)
      Set the SerialNumber property of Detector.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorType

      void setDetectorType​(DetectorType type, int instrumentIndex, int detectorIndex)
      Set the Type property of Detector.
      Parameters:
      type - Type to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorVoltage

      void setDetectorVoltage​(ElectricPotential voltage, int instrumentIndex, int detectorIndex)
      Set the Voltage property of Detector.
      Parameters:
      voltage - Voltage to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorZoom

      void setDetectorZoom​(java.lang.Double zoom, int instrumentIndex, int detectorIndex)
      Set the Zoom property of Detector.
      Parameters:
      zoom - Zoom to set.
      instrumentIndex - the Instrument index.
      detectorIndex - the Detector index.

    • setDetectorSettingsBinning

      void setDetectorSettingsBinning​(Binning binning, int imageIndex, int channelIndex)
      Set the Binning property of DetectorSettings.
      Parameters:
      binning - Binning to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setDetectorSettingsGain

      void setDetectorSettingsGain​(java.lang.Double gain, int imageIndex, int channelIndex)
      Set the Gain property of DetectorSettings.
      Parameters:
      gain - Gain to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setDetectorSettingsID

      void setDetectorSettingsID​(java.lang.String id, int imageIndex, int channelIndex)
      Set the ID property of DetectorSettings.
      Parameters:
      id - ID to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setDetectorSettingsIntegration

      void setDetectorSettingsIntegration​(PositiveInteger integration, int imageIndex, int channelIndex)
      Set the Integration property of DetectorSettings.
      Parameters:
      integration - Integration to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setDetectorSettingsOffset

      void setDetectorSettingsOffset​(java.lang.Double offset, int imageIndex, int channelIndex)
      Set the Offset property of DetectorSettings.
      Parameters:
      offset - Offset to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setDetectorSettingsReadOutRate

      void setDetectorSettingsReadOutRate​(Frequency readOutRate, int imageIndex, int channelIndex)
      Set the ReadOutRate property of DetectorSettings.
      Parameters:
      readOutRate - ReadOutRate to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setDetectorSettingsVoltage

      void setDetectorSettingsVoltage​(ElectricPotential voltage, int imageIndex, int channelIndex)
      Set the Voltage property of DetectorSettings.
      Parameters:
      voltage - Voltage to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setDetectorSettingsZoom

      void setDetectorSettingsZoom​(java.lang.Double zoom, int imageIndex, int channelIndex)
      Set the Zoom property of DetectorSettings.
      Parameters:
      zoom - Zoom to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setDichroicAnnotationRef

      void setDichroicAnnotationRef​(java.lang.String annotation, int instrumentIndex, int dichroicIndex, int annotationRefIndex)
      Set the AnnotationRef property of Dichroic.
      Parameters:
      annotation - AnnotationRef to set.
      instrumentIndex - the Instrument index.
      dichroicIndex - the Dichroic index.
      annotationRefIndex - AnnotationRef index (unused).

    • setDichroicID

      void setDichroicID​(java.lang.String id, int instrumentIndex, int dichroicIndex)
      Set the ID property of Dichroic.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.
      dichroicIndex - the Dichroic index.

    • setDichroicLotNumber

      void setDichroicLotNumber​(java.lang.String lotNumber, int instrumentIndex, int dichroicIndex)
      Set the LotNumber property of Dichroic.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.
      dichroicIndex - the Dichroic index.

    • setDichroicManufacturer

      void setDichroicManufacturer​(java.lang.String manufacturer, int instrumentIndex, int dichroicIndex)
      Set the Manufacturer property of Dichroic.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.
      dichroicIndex - the Dichroic index.

    • setDichroicModel

      void setDichroicModel​(java.lang.String model, int instrumentIndex, int dichroicIndex)
      Set the Model property of Dichroic.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.
      dichroicIndex - the Dichroic index.

    • setDichroicSerialNumber

      void setDichroicSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int dichroicIndex)
      Set the SerialNumber property of Dichroic.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.
      dichroicIndex - the Dichroic index.

    • setDoubleAnnotationAnnotationRef

      void setDoubleAnnotationAnnotationRef​(java.lang.String annotation, int doubleAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of DoubleAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      doubleAnnotationIndex - the DoubleAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setDoubleAnnotationAnnotator

      void setDoubleAnnotationAnnotator​(java.lang.String annotator, int doubleAnnotationIndex)
      Set the Annotator property of DoubleAnnotation.
      Parameters:
      annotator - Annotator to set.
      doubleAnnotationIndex - the DoubleAnnotation index.

    • setDoubleAnnotationDescription

      void setDoubleAnnotationDescription​(java.lang.String description, int doubleAnnotationIndex)
      Set the Description property of DoubleAnnotation.
      Parameters:
      description - Description to set.
      doubleAnnotationIndex - the DoubleAnnotation index.

    • setDoubleAnnotationID

      void setDoubleAnnotationID​(java.lang.String id, int doubleAnnotationIndex)
      Set the ID property of DoubleAnnotation.
      Parameters:
      id - ID to set.
      doubleAnnotationIndex - the DoubleAnnotation index.

    • setDoubleAnnotationNamespace

      void setDoubleAnnotationNamespace​(java.lang.String namespace, int doubleAnnotationIndex)
      Set the Namespace property of DoubleAnnotation.
      Parameters:
      namespace - Namespace to set.
      doubleAnnotationIndex - the DoubleAnnotation index.

    • setDoubleAnnotationValue

      void setDoubleAnnotationValue​(java.lang.Double value, int doubleAnnotationIndex)
      Set the Value property of DoubleAnnotation.
      Parameters:
      value - Value to set.
      doubleAnnotationIndex - the DoubleAnnotation index.

    • setEllipseAnnotationRef

      void setEllipseAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
      Set the AnnotationRef property of Ellipse.
      Parameters:
      annotation - AnnotationRef to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.
      annotationRefIndex - AnnotationRef index (unused).

    • setEllipseFillColor

      void setEllipseFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
      Set the FillColor property of Ellipse.
      Parameters:
      fillColor - FillColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseFillRule

      void setEllipseFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
      Set the FillRule property of Ellipse.
      Parameters:
      fillRule - FillRule to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseFontFamily

      void setEllipseFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
      Set the FontFamily property of Ellipse.
      Parameters:
      fontFamily - FontFamily to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseFontSize

      void setEllipseFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
      Set the FontSize property of Ellipse.
      Parameters:
      fontSize - FontSize to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseFontStyle

      void setEllipseFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
      Set the FontStyle property of Ellipse.
      Parameters:
      fontStyle - FontStyle to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseID

      void setEllipseID​(java.lang.String id, int ROIIndex, int shapeIndex)
      Set the ID property of Ellipse.
      Parameters:
      id - ID to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseLocked

      void setEllipseLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
      Set the Locked property of Ellipse.
      Parameters:
      locked - Locked to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseRadiusX

      void setEllipseRadiusX​(java.lang.Double radiusX, int ROIIndex, int shapeIndex)
      Set the RadiusX property of Ellipse.
      Parameters:
      radiusX - RadiusX to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseRadiusY

      void setEllipseRadiusY​(java.lang.Double radiusY, int ROIIndex, int shapeIndex)
      Set the RadiusY property of Ellipse.
      Parameters:
      radiusY - RadiusY to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseStrokeColor

      void setEllipseStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
      Set the StrokeColor property of Ellipse.
      Parameters:
      strokeColor - StrokeColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseStrokeDashArray

      void setEllipseStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
      Set the StrokeDashArray property of Ellipse.
      Parameters:
      strokeDashArray - StrokeDashArray to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseStrokeWidth

      void setEllipseStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
      Set the StrokeWidth property of Ellipse.
      Parameters:
      strokeWidth - StrokeWidth to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseText

      void setEllipseText​(java.lang.String text, int ROIIndex, int shapeIndex)
      Set the Text property of Ellipse.
      Parameters:
      text - Text to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseTheC

      void setEllipseTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
      Set the TheC property of Ellipse.
      Parameters:
      theC - TheC to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseTheT

      void setEllipseTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
      Set the TheT property of Ellipse.
      Parameters:
      theT - TheT to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseTheZ

      void setEllipseTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
      Set the TheZ property of Ellipse.
      Parameters:
      theZ - TheZ to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseTransform

      void setEllipseTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
      Set the Transform property of Ellipse.
      Parameters:
      transform - Transform to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseX

      void setEllipseX​(java.lang.Double x, int ROIIndex, int shapeIndex)
      Set the X property of Ellipse.
      Parameters:
      x - X to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setEllipseY

      void setEllipseY​(java.lang.Double y, int ROIIndex, int shapeIndex)
      Set the Y property of Ellipse.
      Parameters:
      y - Y to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setExperimentDescription

      void setExperimentDescription​(java.lang.String description, int experimentIndex)
      Set the Description property of Experiment.
      Parameters:
      description - Description to set.
      experimentIndex - the Experiment index.

    • setExperimentExperimenterRef

      void setExperimentExperimenterRef​(java.lang.String experimenter, int experimentIndex)
      Set the ExperimenterRef property of Experiment.
      Parameters:
      experimenter - ExperimenterRef to set.
      experimentIndex - the Experiment index.

    • setExperimentID

      void setExperimentID​(java.lang.String id, int experimentIndex)
      Set the ID property of Experiment.
      Parameters:
      id - ID to set.
      experimentIndex - the Experiment index.

    • setExperimentType

      void setExperimentType​(ExperimentType type, int experimentIndex)
      Set the Type property of Experiment.
      Parameters:
      type - Type to set.
      experimentIndex - the Experiment index.

    • setExperimenterAnnotationRef

      void setExperimenterAnnotationRef​(java.lang.String annotation, int experimenterIndex, int annotationRefIndex)
      Set the AnnotationRef property of Experimenter.
      Parameters:
      annotation - AnnotationRef to set.
      experimenterIndex - the Experimenter index.
      annotationRefIndex - AnnotationRef index (unused).

    • setExperimenterEmail

      void setExperimenterEmail​(java.lang.String email, int experimenterIndex)
      Set the Email property of Experimenter.
      Parameters:
      email - Email to set.
      experimenterIndex - the Experimenter index.

    • setExperimenterFirstName

      void setExperimenterFirstName​(java.lang.String firstName, int experimenterIndex)
      Set the FirstName property of Experimenter.
      Parameters:
      firstName - FirstName to set.
      experimenterIndex - the Experimenter index.

    • setExperimenterID

      void setExperimenterID​(java.lang.String id, int experimenterIndex)
      Set the ID property of Experimenter.
      Parameters:
      id - ID to set.
      experimenterIndex - the Experimenter index.

    • setExperimenterInstitution

      void setExperimenterInstitution​(java.lang.String institution, int experimenterIndex)
      Set the Institution property of Experimenter.
      Parameters:
      institution - Institution to set.
      experimenterIndex - the Experimenter index.

    • setExperimenterLastName

      void setExperimenterLastName​(java.lang.String lastName, int experimenterIndex)
      Set the LastName property of Experimenter.
      Parameters:
      lastName - LastName to set.
      experimenterIndex - the Experimenter index.

    • setExperimenterMiddleName

      void setExperimenterMiddleName​(java.lang.String middleName, int experimenterIndex)
      Set the MiddleName property of Experimenter.
      Parameters:
      middleName - MiddleName to set.
      experimenterIndex - the Experimenter index.

    • setExperimenterUserName

      void setExperimenterUserName​(java.lang.String userName, int experimenterIndex)
      Set the UserName property of Experimenter.
      Parameters:
      userName - UserName to set.
      experimenterIndex - the Experimenter index.

    • setExperimenterGroupAnnotationRef

      void setExperimenterGroupAnnotationRef​(java.lang.String annotation, int experimenterGroupIndex, int annotationRefIndex)
      Set the AnnotationRef property of ExperimenterGroup.
      Parameters:
      annotation - AnnotationRef to set.
      experimenterGroupIndex - the ExperimenterGroup index.
      annotationRefIndex - AnnotationRef index (unused).

    • setExperimenterGroupDescription

      void setExperimenterGroupDescription​(java.lang.String description, int experimenterGroupIndex)
      Set the Description property of ExperimenterGroup.
      Parameters:
      description - Description to set.
      experimenterGroupIndex - the ExperimenterGroup index.

    • setExperimenterGroupExperimenterRef

      void setExperimenterGroupExperimenterRef​(java.lang.String experimenter, int experimenterGroupIndex, int experimenterRefIndex)
      Set the ExperimenterRef property of ExperimenterGroup.
      Parameters:
      experimenter - ExperimenterRef to set.
      experimenterGroupIndex - the ExperimenterGroup index.
      experimenterRefIndex - ExperimenterRef index (unused).

    • setExperimenterGroupID

      void setExperimenterGroupID​(java.lang.String id, int experimenterGroupIndex)
      Set the ID property of ExperimenterGroup.
      Parameters:
      id - ID to set.
      experimenterGroupIndex - the ExperimenterGroup index.

    • setExperimenterGroupLeader

      void setExperimenterGroupLeader​(java.lang.String leader, int experimenterGroupIndex, int leaderIndex)
      Set the Leader property of ExperimenterGroup.
      Parameters:
      leader - Leader to set.
      experimenterGroupIndex - the ExperimenterGroup index.
      leaderIndex - Leader index (unused).

    • setExperimenterGroupName

      void setExperimenterGroupName​(java.lang.String name, int experimenterGroupIndex)
      Set the Name property of ExperimenterGroup.
      Parameters:
      name - Name to set.
      experimenterGroupIndex - the ExperimenterGroup index.

    • setFilamentAnnotationRef

      void setFilamentAnnotationRef​(java.lang.String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)
      Set the AnnotationRef property of Filament.
      Parameters:
      annotation - AnnotationRef to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.
      annotationRefIndex - AnnotationRef index (unused).

    • setFilamentID

      void setFilamentID​(java.lang.String id, int instrumentIndex, int lightSourceIndex)
      Set the ID property of Filament.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setFilamentLotNumber

      void setFilamentLotNumber​(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
      Set the LotNumber property of Filament.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setFilamentManufacturer

      void setFilamentManufacturer​(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
      Set the Manufacturer property of Filament.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setFilamentModel

      void setFilamentModel​(java.lang.String model, int instrumentIndex, int lightSourceIndex)
      Set the Model property of Filament.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setFilamentPower

      void setFilamentPower​(Power power, int instrumentIndex, int lightSourceIndex)
      Set the Power property of Filament.
      Parameters:
      power - Power to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setFilamentSerialNumber

      void setFilamentSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
      Set the SerialNumber property of Filament.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setFilamentType

      void setFilamentType​(FilamentType type, int instrumentIndex, int lightSourceIndex)
      Set the Type property of Filament.
      Parameters:
      type - Type to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setFileAnnotationAnnotationRef

      void setFileAnnotationAnnotationRef​(java.lang.String annotation, int fileAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of FileAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      fileAnnotationIndex - the FileAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setFileAnnotationAnnotator

      void setFileAnnotationAnnotator​(java.lang.String annotator, int fileAnnotationIndex)
      Set the Annotator property of FileAnnotation.
      Parameters:
      annotator - Annotator to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setFileAnnotationDescription

      void setFileAnnotationDescription​(java.lang.String description, int fileAnnotationIndex)
      Set the Description property of FileAnnotation.
      Parameters:
      description - Description to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setFileAnnotationID

      void setFileAnnotationID​(java.lang.String id, int fileAnnotationIndex)
      Set the ID property of FileAnnotation.
      Parameters:
      id - ID to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setFileAnnotationNamespace

      void setFileAnnotationNamespace​(java.lang.String namespace, int fileAnnotationIndex)
      Set the Namespace property of FileAnnotation.
      Parameters:
      namespace - Namespace to set.
      fileAnnotationIndex - the FileAnnotation index.

    • setFilterAnnotationRef

      void setFilterAnnotationRef​(java.lang.String annotation, int instrumentIndex, int filterIndex, int annotationRefIndex)
      Set the AnnotationRef property of Filter.
      Parameters:
      annotation - AnnotationRef to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.
      annotationRefIndex - AnnotationRef index (unused).

    • setFilterFilterWheel

      void setFilterFilterWheel​(java.lang.String filterWheel, int instrumentIndex, int filterIndex)
      Set the FilterWheel property of Filter.
      Parameters:
      filterWheel - FilterWheel to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setFilterID

      void setFilterID​(java.lang.String id, int instrumentIndex, int filterIndex)
      Set the ID property of Filter.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setFilterLotNumber

      void setFilterLotNumber​(java.lang.String lotNumber, int instrumentIndex, int filterIndex)
      Set the LotNumber property of Filter.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setFilterManufacturer

      void setFilterManufacturer​(java.lang.String manufacturer, int instrumentIndex, int filterIndex)
      Set the Manufacturer property of Filter.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setFilterModel

      void setFilterModel​(java.lang.String model, int instrumentIndex, int filterIndex)
      Set the Model property of Filter.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setFilterSerialNumber

      void setFilterSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int filterIndex)
      Set the SerialNumber property of Filter.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setFilterType

      void setFilterType​(FilterType type, int instrumentIndex, int filterIndex)
      Set the Type property of Filter.
      Parameters:
      type - Type to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setFilterSetDichroicRef

      void setFilterSetDichroicRef​(java.lang.String dichroic, int instrumentIndex, int filterSetIndex)
      Set the DichroicRef property of FilterSet.
      Parameters:
      dichroic - DichroicRef to set.
      instrumentIndex - the Instrument index.
      filterSetIndex - the FilterSet index.

    • setFilterSetEmissionFilterRef

      void setFilterSetEmissionFilterRef​(java.lang.String emissionFilter, int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)
      Set the EmissionFilterRef property of FilterSet.
      Parameters:
      emissionFilter - EmissionFilterRef to set.
      instrumentIndex - the Instrument index.
      filterSetIndex - the FilterSet index.
      emissionFilterRefIndex - EmissionFilterRef index (unused).

    • setFilterSetExcitationFilterRef

      void setFilterSetExcitationFilterRef​(java.lang.String excitationFilter, int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)
      Set the ExcitationFilterRef property of FilterSet.
      Parameters:
      excitationFilter - ExcitationFilterRef to set.
      instrumentIndex - the Instrument index.
      filterSetIndex - the FilterSet index.
      excitationFilterRefIndex - ExcitationFilterRef index (unused).

    • setFilterSetID

      void setFilterSetID​(java.lang.String id, int instrumentIndex, int filterSetIndex)
      Set the ID property of FilterSet.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.
      filterSetIndex - the FilterSet index.

    • setFilterSetLotNumber

      void setFilterSetLotNumber​(java.lang.String lotNumber, int instrumentIndex, int filterSetIndex)
      Set the LotNumber property of FilterSet.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.
      filterSetIndex - the FilterSet index.

    • setFilterSetManufacturer

      void setFilterSetManufacturer​(java.lang.String manufacturer, int instrumentIndex, int filterSetIndex)
      Set the Manufacturer property of FilterSet.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.
      filterSetIndex - the FilterSet index.

    • setFilterSetModel

      void setFilterSetModel​(java.lang.String model, int instrumentIndex, int filterSetIndex)
      Set the Model property of FilterSet.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.
      filterSetIndex - the FilterSet index.

    • setFilterSetSerialNumber

      void setFilterSetSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int filterSetIndex)
      Set the SerialNumber property of FilterSet.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.
      filterSetIndex - the FilterSet index.

    • setFolderAnnotationRef

      void setFolderAnnotationRef​(java.lang.String annotation, int folderIndex, int annotationRefIndex)
      Set the AnnotationRef property of Folder.
      Parameters:
      annotation - AnnotationRef to set.
      folderIndex - the Folder index.
      annotationRefIndex - AnnotationRef index (unused).

    • setFolderDescription

      void setFolderDescription​(java.lang.String description, int folderIndex)
      Set the Description property of Folder.
      Parameters:
      description - Description to set.
      folderIndex - the Folder index.

    • setFolderFolderRef

      void setFolderFolderRef​(java.lang.String folder, int folderIndex, int folderRefIndex)
      Set the FolderRef property of Folder.
      Parameters:
      folder - FolderRef to set.
      folderIndex - the Folder index.
      folderRefIndex - FolderRef index (unused).

    • setFolderID

      void setFolderID​(java.lang.String id, int folderIndex)
      Set the ID property of Folder.
      Parameters:
      id - ID to set.
      folderIndex - the Folder index.

    • setFolderImageRef

      void setFolderImageRef​(java.lang.String image, int folderIndex, int imageRefIndex)
      Set the ImageRef property of Folder.
      Parameters:
      image - ImageRef to set.
      folderIndex - the Folder index.
      imageRefIndex - ImageRef index (unused).

    • setFolderName

      void setFolderName​(java.lang.String name, int folderIndex)
      Set the Name property of Folder.
      Parameters:
      name - Name to set.
      folderIndex - the Folder index.

    • setFolderROIRef

      void setFolderROIRef​(java.lang.String roi, int folderIndex, int ROIRefIndex)
      Set the ROIRef property of Folder.
      Parameters:
      roi - ROIRef to set.
      folderIndex - the Folder index.
      ROIRefIndex - ROIRef index (unused).

    • setGenericExcitationSourceAnnotationRef

      void setGenericExcitationSourceAnnotationRef​(java.lang.String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)
      Set the AnnotationRef property of GenericExcitationSource.
      Parameters:
      annotation - AnnotationRef to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.
      annotationRefIndex - AnnotationRef index (unused).

    • setGenericExcitationSourceID

      void setGenericExcitationSourceID​(java.lang.String id, int instrumentIndex, int lightSourceIndex)
      Set the ID property of GenericExcitationSource.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setGenericExcitationSourceLotNumber

      void setGenericExcitationSourceLotNumber​(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
      Set the LotNumber property of GenericExcitationSource.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setGenericExcitationSourceManufacturer

      void setGenericExcitationSourceManufacturer​(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
      Set the Manufacturer property of GenericExcitationSource.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setGenericExcitationSourceModel

      void setGenericExcitationSourceModel​(java.lang.String model, int instrumentIndex, int lightSourceIndex)
      Set the Model property of GenericExcitationSource.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setGenericExcitationSourcePower

      void setGenericExcitationSourcePower​(Power power, int instrumentIndex, int lightSourceIndex)
      Set the Power property of GenericExcitationSource.
      Parameters:
      power - Power to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setGenericExcitationSourceSerialNumber

      void setGenericExcitationSourceSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
      Set the SerialNumber property of GenericExcitationSource.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setImageAcquisitionDate

      void setImageAcquisitionDate​(Timestamp acquisitionDate, int imageIndex)
      Set the AcquisitionDate property of Image.
      Parameters:
      acquisitionDate - AcquisitionDate to set.
      imageIndex - the Image index.

    • setImageAnnotationRef

      void setImageAnnotationRef​(java.lang.String annotation, int imageIndex, int annotationRefIndex)
      Set the AnnotationRef property of Image.
      Parameters:
      annotation - AnnotationRef to set.
      imageIndex - the Image index.
      annotationRefIndex - AnnotationRef index (unused).

    • setImageDescription

      void setImageDescription​(java.lang.String description, int imageIndex)
      Set the Description property of Image.
      Parameters:
      description - Description to set.
      imageIndex - the Image index.

    • setImageExperimentRef

      void setImageExperimentRef​(java.lang.String experiment, int imageIndex)
      Set the ExperimentRef property of Image.
      Parameters:
      experiment - ExperimentRef to set.
      imageIndex - the Image index.

    • setImageExperimenterGroupRef

      void setImageExperimenterGroupRef​(java.lang.String experimenterGroup, int imageIndex)
      Set the ExperimenterGroupRef property of Image.
      Parameters:
      experimenterGroup - ExperimenterGroupRef to set.
      imageIndex - the Image index.

    • setImageExperimenterRef

      void setImageExperimenterRef​(java.lang.String experimenter, int imageIndex)
      Set the ExperimenterRef property of Image.
      Parameters:
      experimenter - ExperimenterRef to set.
      imageIndex - the Image index.

    • setImageID

      void setImageID​(java.lang.String id, int imageIndex)
      Set the ID property of Image.
      Parameters:
      id - ID to set.
      imageIndex - the Image index.

    • setImageInstrumentRef

      void setImageInstrumentRef​(java.lang.String instrument, int imageIndex)
      Set the InstrumentRef property of Image.
      Parameters:
      instrument - InstrumentRef to set.
      imageIndex - the Image index.

    • setImageMicrobeamManipulationRef

      void setImageMicrobeamManipulationRef​(java.lang.String microbeamManipulation, int imageIndex, int microbeamManipulationRefIndex)
      Set the MicrobeamManipulationRef property of Image.
      Parameters:
      microbeamManipulation - MicrobeamManipulationRef to set.
      imageIndex - the Image index.
      microbeamManipulationRefIndex - MicrobeamManipulationRef index (unused).

    • setImageName

      void setImageName​(java.lang.String name, int imageIndex)
      Set the Name property of Image.
      Parameters:
      name - Name to set.
      imageIndex - the Image index.

    • setImageROIRef

      void setImageROIRef​(java.lang.String roi, int imageIndex, int ROIRefIndex)
      Set the ROIRef property of Image.
      Parameters:
      roi - ROIRef to set.
      imageIndex - the Image index.
      ROIRefIndex - ROIRef index (unused).

    • setImagingEnvironmentAirPressure

      void setImagingEnvironmentAirPressure​(Pressure airPressure, int imageIndex)
      Set the AirPressure property of ImagingEnvironment.
      Parameters:
      airPressure - AirPressure to set.
      imageIndex - the Image index.

    • setImagingEnvironmentCO2Percent

      void setImagingEnvironmentCO2Percent​(PercentFraction co2Percent, int imageIndex)
      Set the CO2Percent property of ImagingEnvironment.
      Parameters:
      co2Percent - CO2Percent to set.
      imageIndex - the Image index.

    • setImagingEnvironmentHumidity

      void setImagingEnvironmentHumidity​(PercentFraction humidity, int imageIndex)
      Set the Humidity property of ImagingEnvironment.
      Parameters:
      humidity - Humidity to set.
      imageIndex - the Image index.

    • setImagingEnvironmentTemperature

      void setImagingEnvironmentTemperature​(Temperature temperature, int imageIndex)
      Set the Temperature property of ImagingEnvironment.
      Parameters:
      temperature - Temperature to set.
      imageIndex - the Image index.

    • setInstrumentAnnotationRef

      void setInstrumentAnnotationRef​(java.lang.String annotation, int instrumentIndex, int annotationRefIndex)
      Set the AnnotationRef property of Instrument.
      Parameters:
      annotation - AnnotationRef to set.
      instrumentIndex - the Instrument index.
      annotationRefIndex - AnnotationRef index (unused).

    • setInstrumentID

      void setInstrumentID​(java.lang.String id, int instrumentIndex)
      Set the ID property of Instrument.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.

    • setLabelAnnotationRef

      void setLabelAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
      Set the AnnotationRef property of Label.
      Parameters:
      annotation - AnnotationRef to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.
      annotationRefIndex - AnnotationRef index (unused).

    • setLabelFillColor

      void setLabelFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
      Set the FillColor property of Label.
      Parameters:
      fillColor - FillColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelFillRule

      void setLabelFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
      Set the FillRule property of Label.
      Parameters:
      fillRule - FillRule to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelFontFamily

      void setLabelFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
      Set the FontFamily property of Label.
      Parameters:
      fontFamily - FontFamily to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelFontSize

      void setLabelFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
      Set the FontSize property of Label.
      Parameters:
      fontSize - FontSize to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelFontStyle

      void setLabelFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
      Set the FontStyle property of Label.
      Parameters:
      fontStyle - FontStyle to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelID

      void setLabelID​(java.lang.String id, int ROIIndex, int shapeIndex)
      Set the ID property of Label.
      Parameters:
      id - ID to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelLocked

      void setLabelLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
      Set the Locked property of Label.
      Parameters:
      locked - Locked to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelStrokeColor

      void setLabelStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
      Set the StrokeColor property of Label.
      Parameters:
      strokeColor - StrokeColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelStrokeDashArray

      void setLabelStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
      Set the StrokeDashArray property of Label.
      Parameters:
      strokeDashArray - StrokeDashArray to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelStrokeWidth

      void setLabelStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
      Set the StrokeWidth property of Label.
      Parameters:
      strokeWidth - StrokeWidth to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelText

      void setLabelText​(java.lang.String text, int ROIIndex, int shapeIndex)
      Set the Text property of Label.
      Parameters:
      text - Text to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelTheC

      void setLabelTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
      Set the TheC property of Label.
      Parameters:
      theC - TheC to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelTheT

      void setLabelTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
      Set the TheT property of Label.
      Parameters:
      theT - TheT to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelTheZ

      void setLabelTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
      Set the TheZ property of Label.
      Parameters:
      theZ - TheZ to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelTransform

      void setLabelTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
      Set the Transform property of Label.
      Parameters:
      transform - Transform to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelX

      void setLabelX​(java.lang.Double x, int ROIIndex, int shapeIndex)
      Set the X property of Label.
      Parameters:
      x - X to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLabelY

      void setLabelY​(java.lang.Double y, int ROIIndex, int shapeIndex)
      Set the Y property of Label.
      Parameters:
      y - Y to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLaserAnnotationRef

      void setLaserAnnotationRef​(java.lang.String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)
      Set the AnnotationRef property of Laser.
      Parameters:
      annotation - AnnotationRef to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.
      annotationRefIndex - AnnotationRef index (unused).

    • setLaserFrequencyMultiplication

      void setLaserFrequencyMultiplication​(PositiveInteger frequencyMultiplication, int instrumentIndex, int lightSourceIndex)
      Set the FrequencyMultiplication property of Laser.
      Parameters:
      frequencyMultiplication - FrequencyMultiplication to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserID

      void setLaserID​(java.lang.String id, int instrumentIndex, int lightSourceIndex)
      Set the ID property of Laser.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserLaserMedium

      void setLaserLaserMedium​(LaserMedium laserMedium, int instrumentIndex, int lightSourceIndex)
      Set the LaserMedium property of Laser.
      Parameters:
      laserMedium - LaserMedium to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserLotNumber

      void setLaserLotNumber​(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
      Set the LotNumber property of Laser.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserManufacturer

      void setLaserManufacturer​(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
      Set the Manufacturer property of Laser.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserModel

      void setLaserModel​(java.lang.String model, int instrumentIndex, int lightSourceIndex)
      Set the Model property of Laser.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserPockelCell

      void setLaserPockelCell​(java.lang.Boolean pockelCell, int instrumentIndex, int lightSourceIndex)
      Set the PockelCell property of Laser.
      Parameters:
      pockelCell - PockelCell to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserPower

      void setLaserPower​(Power power, int instrumentIndex, int lightSourceIndex)
      Set the Power property of Laser.
      Parameters:
      power - Power to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserPulse

      void setLaserPulse​(Pulse pulse, int instrumentIndex, int lightSourceIndex)
      Set the Pulse property of Laser.
      Parameters:
      pulse - Pulse to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserPump

      void setLaserPump​(java.lang.String pump, int instrumentIndex, int lightSourceIndex)
      Set the Pump property of Laser.
      Parameters:
      pump - Pump to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserRepetitionRate

      void setLaserRepetitionRate​(Frequency repetitionRate, int instrumentIndex, int lightSourceIndex)
      Set the RepetitionRate property of Laser.
      Parameters:
      repetitionRate - RepetitionRate to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserSerialNumber

      void setLaserSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
      Set the SerialNumber property of Laser.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserTuneable

      void setLaserTuneable​(java.lang.Boolean tuneable, int instrumentIndex, int lightSourceIndex)
      Set the Tuneable property of Laser.
      Parameters:
      tuneable - Tuneable to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserType

      void setLaserType​(LaserType type, int instrumentIndex, int lightSourceIndex)
      Set the Type property of Laser.
      Parameters:
      type - Type to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLaserWavelength

      void setLaserWavelength​(Length wavelength, int instrumentIndex, int lightSourceIndex)
      Set the Wavelength property of Laser.
      Parameters:
      wavelength - Wavelength to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLightEmittingDiodeAnnotationRef

      void setLightEmittingDiodeAnnotationRef​(java.lang.String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)
      Set the AnnotationRef property of LightEmittingDiode.
      Parameters:
      annotation - AnnotationRef to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.
      annotationRefIndex - AnnotationRef index (unused).

    • setLightEmittingDiodeID

      void setLightEmittingDiodeID​(java.lang.String id, int instrumentIndex, int lightSourceIndex)
      Set the ID property of LightEmittingDiode.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLightEmittingDiodeLotNumber

      void setLightEmittingDiodeLotNumber​(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
      Set the LotNumber property of LightEmittingDiode.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLightEmittingDiodeManufacturer

      void setLightEmittingDiodeManufacturer​(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
      Set the Manufacturer property of LightEmittingDiode.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLightEmittingDiodeModel

      void setLightEmittingDiodeModel​(java.lang.String model, int instrumentIndex, int lightSourceIndex)
      Set the Model property of LightEmittingDiode.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLightEmittingDiodePower

      void setLightEmittingDiodePower​(Power power, int instrumentIndex, int lightSourceIndex)
      Set the Power property of LightEmittingDiode.
      Parameters:
      power - Power to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLightEmittingDiodeSerialNumber

      void setLightEmittingDiodeSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
      Set the SerialNumber property of LightEmittingDiode.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.
      lightSourceIndex - the LightSource index.

    • setLightPathAnnotationRef

      void setLightPathAnnotationRef​(java.lang.String annotation, int imageIndex, int channelIndex, int annotationRefIndex)
      Set the AnnotationRef property of LightPath.
      Parameters:
      annotation - AnnotationRef to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.
      annotationRefIndex - AnnotationRef index (unused).

    • setLightPathDichroicRef

      void setLightPathDichroicRef​(java.lang.String dichroic, int imageIndex, int channelIndex)
      Set the DichroicRef property of LightPath.
      Parameters:
      dichroic - DichroicRef to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setLightPathEmissionFilterRef

      void setLightPathEmissionFilterRef​(java.lang.String emissionFilter, int imageIndex, int channelIndex, int emissionFilterRefIndex)
      Set the EmissionFilterRef property of LightPath.
      Parameters:
      emissionFilter - EmissionFilterRef to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.
      emissionFilterRefIndex - EmissionFilterRef index (unused).

    • setLightPathExcitationFilterRef

      void setLightPathExcitationFilterRef​(java.lang.String excitationFilter, int imageIndex, int channelIndex, int excitationFilterRefIndex)
      Set the ExcitationFilterRef property of LightPath.
      Parameters:
      excitationFilter - ExcitationFilterRef to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.
      excitationFilterRefIndex - ExcitationFilterRef index (unused).

    • setChannelLightSourceSettingsAttenuation

      void setChannelLightSourceSettingsAttenuation​(PercentFraction attenuation, int imageIndex, int channelIndex)
      Set the Attenuation property of LightSourceSettings.
      Parameters:
      attenuation - Attenuation to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setMicrobeamManipulationLightSourceSettingsAttenuation

      void setMicrobeamManipulationLightSourceSettingsAttenuation​(PercentFraction attenuation, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)
      Set the Attenuation property of LightSourceSettings.
      Parameters:
      attenuation - Attenuation to set.
      experimentIndex - the Experiment index.
      microbeamManipulationIndex - the MicrobeamManipulation index.
      lightSourceSettingsIndex - the LightSourceSettings index.

    • setChannelLightSourceSettingsID

      void setChannelLightSourceSettingsID​(java.lang.String id, int imageIndex, int channelIndex)
      Set the ID property of LightSourceSettings.
      Parameters:
      id - ID to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setMicrobeamManipulationLightSourceSettingsID

      void setMicrobeamManipulationLightSourceSettingsID​(java.lang.String id, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)
      Set the ID property of LightSourceSettings.
      Parameters:
      id - ID to set.
      experimentIndex - the Experiment index.
      microbeamManipulationIndex - the MicrobeamManipulation index.
      lightSourceSettingsIndex - the LightSourceSettings index.

    • setChannelLightSourceSettingsWavelength

      void setChannelLightSourceSettingsWavelength​(Length wavelength, int imageIndex, int channelIndex)
      Set the Wavelength property of LightSourceSettings.
      Parameters:
      wavelength - Wavelength to set.
      imageIndex - the Image index.
      channelIndex - the Channel index.

    • setMicrobeamManipulationLightSourceSettingsWavelength

      void setMicrobeamManipulationLightSourceSettingsWavelength​(Length wavelength, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)
      Set the Wavelength property of LightSourceSettings.
      Parameters:
      wavelength - Wavelength to set.
      experimentIndex - the Experiment index.
      microbeamManipulationIndex - the MicrobeamManipulation index.
      lightSourceSettingsIndex - the LightSourceSettings index.

    • setLineAnnotationRef

      void setLineAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
      Set the AnnotationRef property of Line.
      Parameters:
      annotation - AnnotationRef to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.
      annotationRefIndex - AnnotationRef index (unused).

    • setLineFillColor

      void setLineFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
      Set the FillColor property of Line.
      Parameters:
      fillColor - FillColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineFillRule

      void setLineFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
      Set the FillRule property of Line.
      Parameters:
      fillRule - FillRule to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineFontFamily

      void setLineFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
      Set the FontFamily property of Line.
      Parameters:
      fontFamily - FontFamily to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineFontSize

      void setLineFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
      Set the FontSize property of Line.
      Parameters:
      fontSize - FontSize to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineFontStyle

      void setLineFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
      Set the FontStyle property of Line.
      Parameters:
      fontStyle - FontStyle to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineID

      void setLineID​(java.lang.String id, int ROIIndex, int shapeIndex)
      Set the ID property of Line.
      Parameters:
      id - ID to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineLocked

      void setLineLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
      Set the Locked property of Line.
      Parameters:
      locked - Locked to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineMarkerEnd

      void setLineMarkerEnd​(Marker markerEnd, int ROIIndex, int shapeIndex)
      Set the MarkerEnd property of Line.
      Parameters:
      markerEnd - MarkerEnd to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineMarkerStart

      void setLineMarkerStart​(Marker markerStart, int ROIIndex, int shapeIndex)
      Set the MarkerStart property of Line.
      Parameters:
      markerStart - MarkerStart to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineStrokeColor

      void setLineStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
      Set the StrokeColor property of Line.
      Parameters:
      strokeColor - StrokeColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineStrokeDashArray

      void setLineStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
      Set the StrokeDashArray property of Line.
      Parameters:
      strokeDashArray - StrokeDashArray to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineStrokeWidth

      void setLineStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
      Set the StrokeWidth property of Line.
      Parameters:
      strokeWidth - StrokeWidth to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineText

      void setLineText​(java.lang.String text, int ROIIndex, int shapeIndex)
      Set the Text property of Line.
      Parameters:
      text - Text to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineTheC

      void setLineTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
      Set the TheC property of Line.
      Parameters:
      theC - TheC to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineTheT

      void setLineTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
      Set the TheT property of Line.
      Parameters:
      theT - TheT to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineTheZ

      void setLineTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
      Set the TheZ property of Line.
      Parameters:
      theZ - TheZ to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineTransform

      void setLineTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
      Set the Transform property of Line.
      Parameters:
      transform - Transform to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineX1

      void setLineX1​(java.lang.Double x1, int ROIIndex, int shapeIndex)
      Set the X1 property of Line.
      Parameters:
      x1 - X1 to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineX2

      void setLineX2​(java.lang.Double x2, int ROIIndex, int shapeIndex)
      Set the X2 property of Line.
      Parameters:
      x2 - X2 to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineY1

      void setLineY1​(java.lang.Double y1, int ROIIndex, int shapeIndex)
      Set the Y1 property of Line.
      Parameters:
      y1 - Y1 to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setLineY2

      void setLineY2​(java.lang.Double y2, int ROIIndex, int shapeIndex)
      Set the Y2 property of Line.
      Parameters:
      y2 - Y2 to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setListAnnotationAnnotationRef

      void setListAnnotationAnnotationRef​(java.lang.String annotation, int listAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of ListAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      listAnnotationIndex - the ListAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setListAnnotationAnnotator

      void setListAnnotationAnnotator​(java.lang.String annotator, int listAnnotationIndex)
      Set the Annotator property of ListAnnotation.
      Parameters:
      annotator - Annotator to set.
      listAnnotationIndex - the ListAnnotation index.

    • setListAnnotationDescription

      void setListAnnotationDescription​(java.lang.String description, int listAnnotationIndex)
      Set the Description property of ListAnnotation.
      Parameters:
      description - Description to set.
      listAnnotationIndex - the ListAnnotation index.

    • setListAnnotationID

      void setListAnnotationID​(java.lang.String id, int listAnnotationIndex)
      Set the ID property of ListAnnotation.
      Parameters:
      id - ID to set.
      listAnnotationIndex - the ListAnnotation index.

    • setListAnnotationNamespace

      void setListAnnotationNamespace​(java.lang.String namespace, int listAnnotationIndex)
      Set the Namespace property of ListAnnotation.
      Parameters:
      namespace - Namespace to set.
      listAnnotationIndex - the ListAnnotation index.

    • setLongAnnotationAnnotationRef

      void setLongAnnotationAnnotationRef​(java.lang.String annotation, int longAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of LongAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      longAnnotationIndex - the LongAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setLongAnnotationAnnotator

      void setLongAnnotationAnnotator​(java.lang.String annotator, int longAnnotationIndex)
      Set the Annotator property of LongAnnotation.
      Parameters:
      annotator - Annotator to set.
      longAnnotationIndex - the LongAnnotation index.

    • setLongAnnotationDescription

      void setLongAnnotationDescription​(java.lang.String description, int longAnnotationIndex)
      Set the Description property of LongAnnotation.
      Parameters:
      description - Description to set.
      longAnnotationIndex - the LongAnnotation index.

    • setLongAnnotationID

      void setLongAnnotationID​(java.lang.String id, int longAnnotationIndex)
      Set the ID property of LongAnnotation.
      Parameters:
      id - ID to set.
      longAnnotationIndex - the LongAnnotation index.

    • setLongAnnotationNamespace

      void setLongAnnotationNamespace​(java.lang.String namespace, int longAnnotationIndex)
      Set the Namespace property of LongAnnotation.
      Parameters:
      namespace - Namespace to set.
      longAnnotationIndex - the LongAnnotation index.

    • setLongAnnotationValue

      void setLongAnnotationValue​(java.lang.Long value, int longAnnotationIndex)
      Set the Value property of LongAnnotation.
      Parameters:
      value - Value to set.
      longAnnotationIndex - the LongAnnotation index.

    • setMapAnnotationAnnotationRef

      void setMapAnnotationAnnotationRef​(java.lang.String annotation, int mapAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of MapAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      mapAnnotationIndex - the MapAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setMapAnnotationAnnotator

      void setMapAnnotationAnnotator​(java.lang.String annotator, int mapAnnotationIndex)
      Set the Annotator property of MapAnnotation.
      Parameters:
      annotator - Annotator to set.
      mapAnnotationIndex - the MapAnnotation index.

    • setMapAnnotationDescription

      void setMapAnnotationDescription​(java.lang.String description, int mapAnnotationIndex)
      Set the Description property of MapAnnotation.
      Parameters:
      description - Description to set.
      mapAnnotationIndex - the MapAnnotation index.

    • setMapAnnotationID

      void setMapAnnotationID​(java.lang.String id, int mapAnnotationIndex)
      Set the ID property of MapAnnotation.
      Parameters:
      id - ID to set.
      mapAnnotationIndex - the MapAnnotation index.

    • setMapAnnotationNamespace

      void setMapAnnotationNamespace​(java.lang.String namespace, int mapAnnotationIndex)
      Set the Namespace property of MapAnnotation.
      Parameters:
      namespace - Namespace to set.
      mapAnnotationIndex - the MapAnnotation index.

    • setMaskAnnotationRef

      void setMaskAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
      Set the AnnotationRef property of Mask.
      Parameters:
      annotation - AnnotationRef to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.
      annotationRefIndex - AnnotationRef index (unused).

    • setMaskFillColor

      void setMaskFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
      Set the FillColor property of Mask.
      Parameters:
      fillColor - FillColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskFillRule

      void setMaskFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
      Set the FillRule property of Mask.
      Parameters:
      fillRule - FillRule to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskFontFamily

      void setMaskFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
      Set the FontFamily property of Mask.
      Parameters:
      fontFamily - FontFamily to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskFontSize

      void setMaskFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
      Set the FontSize property of Mask.
      Parameters:
      fontSize - FontSize to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskFontStyle

      void setMaskFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
      Set the FontStyle property of Mask.
      Parameters:
      fontStyle - FontStyle to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskHeight

      void setMaskHeight​(java.lang.Double height, int ROIIndex, int shapeIndex)
      Set the Height property of Mask.
      Parameters:
      height - Height to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskID

      void setMaskID​(java.lang.String id, int ROIIndex, int shapeIndex)
      Set the ID property of Mask.
      Parameters:
      id - ID to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskLocked

      void setMaskLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
      Set the Locked property of Mask.
      Parameters:
      locked - Locked to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskStrokeColor

      void setMaskStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
      Set the StrokeColor property of Mask.
      Parameters:
      strokeColor - StrokeColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskStrokeDashArray

      void setMaskStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
      Set the StrokeDashArray property of Mask.
      Parameters:
      strokeDashArray - StrokeDashArray to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskStrokeWidth

      void setMaskStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
      Set the StrokeWidth property of Mask.
      Parameters:
      strokeWidth - StrokeWidth to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskText

      void setMaskText​(java.lang.String text, int ROIIndex, int shapeIndex)
      Set the Text property of Mask.
      Parameters:
      text - Text to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskTheC

      void setMaskTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
      Set the TheC property of Mask.
      Parameters:
      theC - TheC to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskTheT

      void setMaskTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
      Set the TheT property of Mask.
      Parameters:
      theT - TheT to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskTheZ

      void setMaskTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
      Set the TheZ property of Mask.
      Parameters:
      theZ - TheZ to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskTransform

      void setMaskTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
      Set the Transform property of Mask.
      Parameters:
      transform - Transform to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskWidth

      void setMaskWidth​(java.lang.Double width, int ROIIndex, int shapeIndex)
      Set the Width property of Mask.
      Parameters:
      width - Width to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskX

      void setMaskX​(java.lang.Double x, int ROIIndex, int shapeIndex)
      Set the X property of Mask.
      Parameters:
      x - X to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMaskY

      void setMaskY​(java.lang.Double y, int ROIIndex, int shapeIndex)
      Set the Y property of Mask.
      Parameters:
      y - Y to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setMicrobeamManipulationDescription

      void setMicrobeamManipulationDescription​(java.lang.String description, int experimentIndex, int microbeamManipulationIndex)
      Set the Description property of MicrobeamManipulation.
      Parameters:
      description - Description to set.
      experimentIndex - the Experiment index.
      microbeamManipulationIndex - the MicrobeamManipulation index.

    • setMicrobeamManipulationExperimenterRef

      void setMicrobeamManipulationExperimenterRef​(java.lang.String experimenter, int experimentIndex, int microbeamManipulationIndex)
      Set the ExperimenterRef property of MicrobeamManipulation.
      Parameters:
      experimenter - ExperimenterRef to set.
      experimentIndex - the Experiment index.
      microbeamManipulationIndex - the MicrobeamManipulation index.

    • setMicrobeamManipulationID

      void setMicrobeamManipulationID​(java.lang.String id, int experimentIndex, int microbeamManipulationIndex)
      Set the ID property of MicrobeamManipulation.
      Parameters:
      id - ID to set.
      experimentIndex - the Experiment index.
      microbeamManipulationIndex - the MicrobeamManipulation index.

    • setMicrobeamManipulationROIRef

      void setMicrobeamManipulationROIRef​(java.lang.String roi, int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)
      Set the ROIRef property of MicrobeamManipulation.
      Parameters:
      roi - ROIRef to set.
      experimentIndex - the Experiment index.
      microbeamManipulationIndex - the MicrobeamManipulation index.
      ROIRefIndex - ROIRef index (unused).

    • setMicrobeamManipulationType

      void setMicrobeamManipulationType​(MicrobeamManipulationType type, int experimentIndex, int microbeamManipulationIndex)
      Set the Type property of MicrobeamManipulation.
      Parameters:
      type - Type to set.
      experimentIndex - the Experiment index.
      microbeamManipulationIndex - the MicrobeamManipulation index.

    • setMicroscopeLotNumber

      void setMicroscopeLotNumber​(java.lang.String lotNumber, int instrumentIndex)
      Set the LotNumber property of Microscope.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.

    • setMicroscopeManufacturer

      void setMicroscopeManufacturer​(java.lang.String manufacturer, int instrumentIndex)
      Set the Manufacturer property of Microscope.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.

    • setMicroscopeModel

      void setMicroscopeModel​(java.lang.String model, int instrumentIndex)
      Set the Model property of Microscope.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.

    • setMicroscopeSerialNumber

      void setMicroscopeSerialNumber​(java.lang.String serialNumber, int instrumentIndex)
      Set the SerialNumber property of Microscope.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.

    • setMicroscopeType

      void setMicroscopeType​(MicroscopeType type, int instrumentIndex)
      Set the Type property of Microscope.
      Parameters:
      type - Type to set.
      instrumentIndex - the Instrument index.

    • setObjectiveAnnotationRef

      void setObjectiveAnnotationRef​(java.lang.String annotation, int instrumentIndex, int objectiveIndex, int annotationRefIndex)
      Set the AnnotationRef property of Objective.
      Parameters:
      annotation - AnnotationRef to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.
      annotationRefIndex - AnnotationRef index (unused).

    • setObjectiveCalibratedMagnification

      void setObjectiveCalibratedMagnification​(java.lang.Double calibratedMagnification, int instrumentIndex, int objectiveIndex)
      Set the CalibratedMagnification property of Objective.
      Parameters:
      calibratedMagnification - CalibratedMagnification to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveCorrection

      void setObjectiveCorrection​(Correction correction, int instrumentIndex, int objectiveIndex)
      Set the Correction property of Objective.
      Parameters:
      correction - Correction to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveID

      void setObjectiveID​(java.lang.String id, int instrumentIndex, int objectiveIndex)
      Set the ID property of Objective.
      Parameters:
      id - ID to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveImmersion

      void setObjectiveImmersion​(Immersion immersion, int instrumentIndex, int objectiveIndex)
      Set the Immersion property of Objective.
      Parameters:
      immersion - Immersion to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveIris

      void setObjectiveIris​(java.lang.Boolean iris, int instrumentIndex, int objectiveIndex)
      Set the Iris property of Objective.
      Parameters:
      iris - Iris to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveLensNA

      void setObjectiveLensNA​(java.lang.Double lensNA, int instrumentIndex, int objectiveIndex)
      Set the LensNA property of Objective.
      Parameters:
      lensNA - LensNA to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveLotNumber

      void setObjectiveLotNumber​(java.lang.String lotNumber, int instrumentIndex, int objectiveIndex)
      Set the LotNumber property of Objective.
      Parameters:
      lotNumber - LotNumber to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveManufacturer

      void setObjectiveManufacturer​(java.lang.String manufacturer, int instrumentIndex, int objectiveIndex)
      Set the Manufacturer property of Objective.
      Parameters:
      manufacturer - Manufacturer to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveModel

      void setObjectiveModel​(java.lang.String model, int instrumentIndex, int objectiveIndex)
      Set the Model property of Objective.
      Parameters:
      model - Model to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveNominalMagnification

      void setObjectiveNominalMagnification​(java.lang.Double nominalMagnification, int instrumentIndex, int objectiveIndex)
      Set the NominalMagnification property of Objective.
      Parameters:
      nominalMagnification - NominalMagnification to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveSerialNumber

      void setObjectiveSerialNumber​(java.lang.String serialNumber, int instrumentIndex, int objectiveIndex)
      Set the SerialNumber property of Objective.
      Parameters:
      serialNumber - SerialNumber to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveWorkingDistance

      void setObjectiveWorkingDistance​(Length workingDistance, int instrumentIndex, int objectiveIndex)
      Set the WorkingDistance property of Objective.
      Parameters:
      workingDistance - WorkingDistance to set.
      instrumentIndex - the Instrument index.
      objectiveIndex - the Objective index.

    • setObjectiveSettingsCorrectionCollar

      void setObjectiveSettingsCorrectionCollar​(java.lang.Double correctionCollar, int imageIndex)
      Set the CorrectionCollar property of ObjectiveSettings.
      Parameters:
      correctionCollar - CorrectionCollar to set.
      imageIndex - the Image index.

    • setObjectiveSettingsID

      void setObjectiveSettingsID​(java.lang.String id, int imageIndex)
      Set the ID property of ObjectiveSettings.
      Parameters:
      id - ID to set.
      imageIndex - the Image index.

    • setObjectiveSettingsMedium

      void setObjectiveSettingsMedium​(Medium medium, int imageIndex)
      Set the Medium property of ObjectiveSettings.
      Parameters:
      medium - Medium to set.
      imageIndex - the Image index.

    • setObjectiveSettingsRefractiveIndex

      void setObjectiveSettingsRefractiveIndex​(java.lang.Double refractiveIndex, int imageIndex)
      Set the RefractiveIndex property of ObjectiveSettings.
      Parameters:
      refractiveIndex - RefractiveIndex to set.
      imageIndex - the Image index.

    • setPixelsBigEndian

      void setPixelsBigEndian​(java.lang.Boolean bigEndian, int imageIndex)
      Set the BigEndian property of Pixels.
      Parameters:
      bigEndian - BigEndian to set.
      imageIndex - the Image index.

    • setPixelsDimensionOrder

      void setPixelsDimensionOrder​(DimensionOrder dimensionOrder, int imageIndex)
      Set the DimensionOrder property of Pixels.
      Parameters:
      dimensionOrder - DimensionOrder to set.
      imageIndex - the Image index.

    • setPixelsID

      void setPixelsID​(java.lang.String id, int imageIndex)
      Set the ID property of Pixels.
      Parameters:
      id - ID to set.
      imageIndex - the Image index.

    • setPixelsInterleaved

      void setPixelsInterleaved​(java.lang.Boolean interleaved, int imageIndex)
      Set the Interleaved property of Pixels.
      Parameters:
      interleaved - Interleaved to set.
      imageIndex - the Image index.

    • setPixelsPhysicalSizeX

      void setPixelsPhysicalSizeX​(Length physicalSizeX, int imageIndex)
      Set the PhysicalSizeX property of Pixels.
      Parameters:
      physicalSizeX - PhysicalSizeX to set.
      imageIndex - the Image index.

    • setPixelsPhysicalSizeY

      void setPixelsPhysicalSizeY​(Length physicalSizeY, int imageIndex)
      Set the PhysicalSizeY property of Pixels.
      Parameters:
      physicalSizeY - PhysicalSizeY to set.
      imageIndex - the Image index.

    • setPixelsPhysicalSizeZ

      void setPixelsPhysicalSizeZ​(Length physicalSizeZ, int imageIndex)
      Set the PhysicalSizeZ property of Pixels.
      Parameters:
      physicalSizeZ - PhysicalSizeZ to set.
      imageIndex - the Image index.

    • setPixelsSignificantBits

      void setPixelsSignificantBits​(PositiveInteger significantBits, int imageIndex)
      Set the SignificantBits property of Pixels.
      Parameters:
      significantBits - SignificantBits to set.
      imageIndex - the Image index.

    • setPixelsSizeC

      void setPixelsSizeC​(PositiveInteger sizeC, int imageIndex)
      Set the SizeC property of Pixels.
      Parameters:
      sizeC - SizeC to set.
      imageIndex - the Image index.

    • setPixelsSizeT

      void setPixelsSizeT​(PositiveInteger sizeT, int imageIndex)
      Set the SizeT property of Pixels.
      Parameters:
      sizeT - SizeT to set.
      imageIndex - the Image index.

    • setPixelsSizeX

      void setPixelsSizeX​(PositiveInteger sizeX, int imageIndex)
      Set the SizeX property of Pixels.
      Parameters:
      sizeX - SizeX to set.
      imageIndex - the Image index.

    • setPixelsSizeY

      void setPixelsSizeY​(PositiveInteger sizeY, int imageIndex)
      Set the SizeY property of Pixels.
      Parameters:
      sizeY - SizeY to set.
      imageIndex - the Image index.

    • setPixelsSizeZ

      void setPixelsSizeZ​(PositiveInteger sizeZ, int imageIndex)
      Set the SizeZ property of Pixels.
      Parameters:
      sizeZ - SizeZ to set.
      imageIndex - the Image index.

    • setPixelsTimeIncrement

      void setPixelsTimeIncrement​(Time timeIncrement, int imageIndex)
      Set the TimeIncrement property of Pixels.
      Parameters:
      timeIncrement - TimeIncrement to set.
      imageIndex - the Image index.

    • setPixelsType

      void setPixelsType​(PixelType type, int imageIndex)
      Set the Type property of Pixels.
      Parameters:
      type - Type to set.
      imageIndex - the Image index.

    • setPlaneAnnotationRef

      void setPlaneAnnotationRef​(java.lang.String annotation, int imageIndex, int planeIndex, int annotationRefIndex)
      Set the AnnotationRef property of Plane.
      Parameters:
      annotation - AnnotationRef to set.
      imageIndex - the Image index.
      planeIndex - the Plane index.
      annotationRefIndex - AnnotationRef index (unused).

    • setPlaneDeltaT

      void setPlaneDeltaT​(Time deltaT, int imageIndex, int planeIndex)
      Set the DeltaT property of Plane.
      Parameters:
      deltaT - DeltaT to set.
      imageIndex - the Image index.
      planeIndex - the Plane index.

    • setPlaneExposureTime

      void setPlaneExposureTime​(Time exposureTime, int imageIndex, int planeIndex)
      Set the ExposureTime property of Plane.
      Parameters:
      exposureTime - ExposureTime to set.
      imageIndex - the Image index.
      planeIndex - the Plane index.

    • setPlaneHashSHA1

      void setPlaneHashSHA1​(java.lang.String hashSHA1, int imageIndex, int planeIndex)
      Set the HashSHA1 property of Plane.
      Parameters:
      hashSHA1 - HashSHA1 to set.
      imageIndex - the Image index.
      planeIndex - the Plane index.

    • setPlanePositionX

      void setPlanePositionX​(Length positionX, int imageIndex, int planeIndex)
      Set the PositionX property of Plane.
      Parameters:
      positionX - PositionX to set.
      imageIndex - the Image index.
      planeIndex - the Plane index.

    • setPlanePositionY

      void setPlanePositionY​(Length positionY, int imageIndex, int planeIndex)
      Set the PositionY property of Plane.
      Parameters:
      positionY - PositionY to set.
      imageIndex - the Image index.
      planeIndex - the Plane index.

    • setPlanePositionZ

      void setPlanePositionZ​(Length positionZ, int imageIndex, int planeIndex)
      Set the PositionZ property of Plane.
      Parameters:
      positionZ - PositionZ to set.
      imageIndex - the Image index.
      planeIndex - the Plane index.

    • setPlaneTheC

      void setPlaneTheC​(NonNegativeInteger theC, int imageIndex, int planeIndex)
      Set the TheC property of Plane.
      Parameters:
      theC - TheC to set.
      imageIndex - the Image index.
      planeIndex - the Plane index.

    • setPlaneTheT

      void setPlaneTheT​(NonNegativeInteger theT, int imageIndex, int planeIndex)
      Set the TheT property of Plane.
      Parameters:
      theT - TheT to set.
      imageIndex - the Image index.
      planeIndex - the Plane index.

    • setPlaneTheZ

      void setPlaneTheZ​(NonNegativeInteger theZ, int imageIndex, int planeIndex)
      Set the TheZ property of Plane.
      Parameters:
      theZ - TheZ to set.
      imageIndex - the Image index.
      planeIndex - the Plane index.

    • setPlateAnnotationRef

      void setPlateAnnotationRef​(java.lang.String annotation, int plateIndex, int annotationRefIndex)
      Set the AnnotationRef property of Plate.
      Parameters:
      annotation - AnnotationRef to set.
      plateIndex - the Plate index.
      annotationRefIndex - AnnotationRef index (unused).

    • setPlateColumnNamingConvention

      void setPlateColumnNamingConvention​(NamingConvention columnNamingConvention, int plateIndex)
      Set the ColumnNamingConvention property of Plate.
      Parameters:
      columnNamingConvention - ColumnNamingConvention to set.
      plateIndex - the Plate index.

    • setPlateColumns

      void setPlateColumns​(PositiveInteger columns, int plateIndex)
      Set the Columns property of Plate.
      Parameters:
      columns - Columns to set.
      plateIndex - the Plate index.

    • setPlateDescription

      void setPlateDescription​(java.lang.String description, int plateIndex)
      Set the Description property of Plate.
      Parameters:
      description - Description to set.
      plateIndex - the Plate index.

    • setPlateExternalIdentifier

      void setPlateExternalIdentifier​(java.lang.String externalIdentifier, int plateIndex)
      Set the ExternalIdentifier property of Plate.
      Parameters:
      externalIdentifier - ExternalIdentifier to set.
      plateIndex - the Plate index.

    • setPlateFieldIndex

      void setPlateFieldIndex​(NonNegativeInteger fieldIndex, int plateIndex)
      Set the FieldIndex property of Plate.
      Parameters:
      fieldIndex - FieldIndex to set.
      plateIndex - the Plate index.

    • setPlateID

      void setPlateID​(java.lang.String id, int plateIndex)
      Set the ID property of Plate.
      Parameters:
      id - ID to set.
      plateIndex - the Plate index.

    • setPlateName

      void setPlateName​(java.lang.String name, int plateIndex)
      Set the Name property of Plate.
      Parameters:
      name - Name to set.
      plateIndex - the Plate index.

    • setPlateRowNamingConvention

      void setPlateRowNamingConvention​(NamingConvention rowNamingConvention, int plateIndex)
      Set the RowNamingConvention property of Plate.
      Parameters:
      rowNamingConvention - RowNamingConvention to set.
      plateIndex - the Plate index.

    • setPlateRows

      void setPlateRows​(PositiveInteger rows, int plateIndex)
      Set the Rows property of Plate.
      Parameters:
      rows - Rows to set.
      plateIndex - the Plate index.

    • setPlateStatus

      void setPlateStatus​(java.lang.String status, int plateIndex)
      Set the Status property of Plate.
      Parameters:
      status - Status to set.
      plateIndex - the Plate index.

    • setPlateWellOriginX

      void setPlateWellOriginX​(Length wellOriginX, int plateIndex)
      Set the WellOriginX property of Plate.
      Parameters:
      wellOriginX - WellOriginX to set.
      plateIndex - the Plate index.

    • setPlateWellOriginY

      void setPlateWellOriginY​(Length wellOriginY, int plateIndex)
      Set the WellOriginY property of Plate.
      Parameters:
      wellOriginY - WellOriginY to set.
      plateIndex - the Plate index.

    • setPlateAcquisitionAnnotationRef

      void setPlateAcquisitionAnnotationRef​(java.lang.String annotation, int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)
      Set the AnnotationRef property of PlateAcquisition.
      Parameters:
      annotation - AnnotationRef to set.
      plateIndex - the Plate index.
      plateAcquisitionIndex - the PlateAcquisition index.
      annotationRefIndex - AnnotationRef index (unused).

    • setPlateAcquisitionDescription

      void setPlateAcquisitionDescription​(java.lang.String description, int plateIndex, int plateAcquisitionIndex)
      Set the Description property of PlateAcquisition.
      Parameters:
      description - Description to set.
      plateIndex - the Plate index.
      plateAcquisitionIndex - the PlateAcquisition index.

    • setPlateAcquisitionEndTime

      void setPlateAcquisitionEndTime​(Timestamp endTime, int plateIndex, int plateAcquisitionIndex)
      Set the EndTime property of PlateAcquisition.
      Parameters:
      endTime - EndTime to set.
      plateIndex - the Plate index.
      plateAcquisitionIndex - the PlateAcquisition index.

    • setPlateAcquisitionID

      void setPlateAcquisitionID​(java.lang.String id, int plateIndex, int plateAcquisitionIndex)
      Set the ID property of PlateAcquisition.
      Parameters:
      id - ID to set.
      plateIndex - the Plate index.
      plateAcquisitionIndex - the PlateAcquisition index.

    • setPlateAcquisitionMaximumFieldCount

      void setPlateAcquisitionMaximumFieldCount​(PositiveInteger maximumFieldCount, int plateIndex, int plateAcquisitionIndex)
      Set the MaximumFieldCount property of PlateAcquisition.
      Parameters:
      maximumFieldCount - MaximumFieldCount to set.
      plateIndex - the Plate index.
      plateAcquisitionIndex - the PlateAcquisition index.

    • setPlateAcquisitionName

      void setPlateAcquisitionName​(java.lang.String name, int plateIndex, int plateAcquisitionIndex)
      Set the Name property of PlateAcquisition.
      Parameters:
      name - Name to set.
      plateIndex - the Plate index.
      plateAcquisitionIndex - the PlateAcquisition index.

    • setPlateAcquisitionStartTime

      void setPlateAcquisitionStartTime​(Timestamp startTime, int plateIndex, int plateAcquisitionIndex)
      Set the StartTime property of PlateAcquisition.
      Parameters:
      startTime - StartTime to set.
      plateIndex - the Plate index.
      plateAcquisitionIndex - the PlateAcquisition index.

    • setPlateAcquisitionWellSampleRef

      void setPlateAcquisitionWellSampleRef​(java.lang.String wellSample, int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)
      Set the WellSampleRef property of PlateAcquisition.
      Parameters:
      wellSample - WellSampleRef to set.
      plateIndex - the Plate index.
      plateAcquisitionIndex - the PlateAcquisition index.
      wellSampleRefIndex - WellSampleRef index (unused).

    • setPointAnnotationRef

      void setPointAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
      Set the AnnotationRef property of Point.
      Parameters:
      annotation - AnnotationRef to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.
      annotationRefIndex - AnnotationRef index (unused).

    • setPointFillColor

      void setPointFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
      Set the FillColor property of Point.
      Parameters:
      fillColor - FillColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointFillRule

      void setPointFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
      Set the FillRule property of Point.
      Parameters:
      fillRule - FillRule to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointFontFamily

      void setPointFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
      Set the FontFamily property of Point.
      Parameters:
      fontFamily - FontFamily to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointFontSize

      void setPointFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
      Set the FontSize property of Point.
      Parameters:
      fontSize - FontSize to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointFontStyle

      void setPointFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
      Set the FontStyle property of Point.
      Parameters:
      fontStyle - FontStyle to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointID

      void setPointID​(java.lang.String id, int ROIIndex, int shapeIndex)
      Set the ID property of Point.
      Parameters:
      id - ID to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointLocked

      void setPointLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
      Set the Locked property of Point.
      Parameters:
      locked - Locked to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointStrokeColor

      void setPointStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
      Set the StrokeColor property of Point.
      Parameters:
      strokeColor - StrokeColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointStrokeDashArray

      void setPointStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
      Set the StrokeDashArray property of Point.
      Parameters:
      strokeDashArray - StrokeDashArray to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointStrokeWidth

      void setPointStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
      Set the StrokeWidth property of Point.
      Parameters:
      strokeWidth - StrokeWidth to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointText

      void setPointText​(java.lang.String text, int ROIIndex, int shapeIndex)
      Set the Text property of Point.
      Parameters:
      text - Text to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointTheC

      void setPointTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
      Set the TheC property of Point.
      Parameters:
      theC - TheC to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointTheT

      void setPointTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
      Set the TheT property of Point.
      Parameters:
      theT - TheT to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointTheZ

      void setPointTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
      Set the TheZ property of Point.
      Parameters:
      theZ - TheZ to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointTransform

      void setPointTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
      Set the Transform property of Point.
      Parameters:
      transform - Transform to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointX

      void setPointX​(java.lang.Double x, int ROIIndex, int shapeIndex)
      Set the X property of Point.
      Parameters:
      x - X to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPointY

      void setPointY​(java.lang.Double y, int ROIIndex, int shapeIndex)
      Set the Y property of Point.
      Parameters:
      y - Y to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonAnnotationRef

      void setPolygonAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
      Set the AnnotationRef property of Polygon.
      Parameters:
      annotation - AnnotationRef to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.
      annotationRefIndex - AnnotationRef index (unused).

    • setPolygonFillColor

      void setPolygonFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
      Set the FillColor property of Polygon.
      Parameters:
      fillColor - FillColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonFillRule

      void setPolygonFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
      Set the FillRule property of Polygon.
      Parameters:
      fillRule - FillRule to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonFontFamily

      void setPolygonFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
      Set the FontFamily property of Polygon.
      Parameters:
      fontFamily - FontFamily to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonFontSize

      void setPolygonFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
      Set the FontSize property of Polygon.
      Parameters:
      fontSize - FontSize to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonFontStyle

      void setPolygonFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
      Set the FontStyle property of Polygon.
      Parameters:
      fontStyle - FontStyle to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonID

      void setPolygonID​(java.lang.String id, int ROIIndex, int shapeIndex)
      Set the ID property of Polygon.
      Parameters:
      id - ID to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonLocked

      void setPolygonLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
      Set the Locked property of Polygon.
      Parameters:
      locked - Locked to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonPoints

      void setPolygonPoints​(java.lang.String points, int ROIIndex, int shapeIndex)
      Set the Points property of Polygon.
      Parameters:
      points - Points to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonStrokeColor

      void setPolygonStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
      Set the StrokeColor property of Polygon.
      Parameters:
      strokeColor - StrokeColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonStrokeDashArray

      void setPolygonStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
      Set the StrokeDashArray property of Polygon.
      Parameters:
      strokeDashArray - StrokeDashArray to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonStrokeWidth

      void setPolygonStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
      Set the StrokeWidth property of Polygon.
      Parameters:
      strokeWidth - StrokeWidth to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonText

      void setPolygonText​(java.lang.String text, int ROIIndex, int shapeIndex)
      Set the Text property of Polygon.
      Parameters:
      text - Text to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonTheC

      void setPolygonTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
      Set the TheC property of Polygon.
      Parameters:
      theC - TheC to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonTheT

      void setPolygonTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
      Set the TheT property of Polygon.
      Parameters:
      theT - TheT to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonTheZ

      void setPolygonTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
      Set the TheZ property of Polygon.
      Parameters:
      theZ - TheZ to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolygonTransform

      void setPolygonTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
      Set the Transform property of Polygon.
      Parameters:
      transform - Transform to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineAnnotationRef

      void setPolylineAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
      Set the AnnotationRef property of Polyline.
      Parameters:
      annotation - AnnotationRef to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.
      annotationRefIndex - AnnotationRef index (unused).

    • setPolylineFillColor

      void setPolylineFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
      Set the FillColor property of Polyline.
      Parameters:
      fillColor - FillColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineFillRule

      void setPolylineFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
      Set the FillRule property of Polyline.
      Parameters:
      fillRule - FillRule to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineFontFamily

      void setPolylineFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
      Set the FontFamily property of Polyline.
      Parameters:
      fontFamily - FontFamily to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineFontSize

      void setPolylineFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
      Set the FontSize property of Polyline.
      Parameters:
      fontSize - FontSize to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineFontStyle

      void setPolylineFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
      Set the FontStyle property of Polyline.
      Parameters:
      fontStyle - FontStyle to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineID

      void setPolylineID​(java.lang.String id, int ROIIndex, int shapeIndex)
      Set the ID property of Polyline.
      Parameters:
      id - ID to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineLocked

      void setPolylineLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
      Set the Locked property of Polyline.
      Parameters:
      locked - Locked to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineMarkerEnd

      void setPolylineMarkerEnd​(Marker markerEnd, int ROIIndex, int shapeIndex)
      Set the MarkerEnd property of Polyline.
      Parameters:
      markerEnd - MarkerEnd to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineMarkerStart

      void setPolylineMarkerStart​(Marker markerStart, int ROIIndex, int shapeIndex)
      Set the MarkerStart property of Polyline.
      Parameters:
      markerStart - MarkerStart to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylinePoints

      void setPolylinePoints​(java.lang.String points, int ROIIndex, int shapeIndex)
      Set the Points property of Polyline.
      Parameters:
      points - Points to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineStrokeColor

      void setPolylineStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
      Set the StrokeColor property of Polyline.
      Parameters:
      strokeColor - StrokeColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineStrokeDashArray

      void setPolylineStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
      Set the StrokeDashArray property of Polyline.
      Parameters:
      strokeDashArray - StrokeDashArray to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineStrokeWidth

      void setPolylineStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
      Set the StrokeWidth property of Polyline.
      Parameters:
      strokeWidth - StrokeWidth to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineText

      void setPolylineText​(java.lang.String text, int ROIIndex, int shapeIndex)
      Set the Text property of Polyline.
      Parameters:
      text - Text to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineTheC

      void setPolylineTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
      Set the TheC property of Polyline.
      Parameters:
      theC - TheC to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineTheT

      void setPolylineTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
      Set the TheT property of Polyline.
      Parameters:
      theT - TheT to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineTheZ

      void setPolylineTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
      Set the TheZ property of Polyline.
      Parameters:
      theZ - TheZ to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setPolylineTransform

      void setPolylineTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
      Set the Transform property of Polyline.
      Parameters:
      transform - Transform to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setProjectAnnotationRef

      void setProjectAnnotationRef​(java.lang.String annotation, int projectIndex, int annotationRefIndex)
      Set the AnnotationRef property of Project.
      Parameters:
      annotation - AnnotationRef to set.
      projectIndex - the Project index.
      annotationRefIndex - AnnotationRef index (unused).

    • setProjectDatasetRef

      void setProjectDatasetRef​(java.lang.String dataset, int projectIndex, int datasetRefIndex)
      Set the DatasetRef property of Project.
      Parameters:
      dataset - DatasetRef to set.
      projectIndex - the Project index.
      datasetRefIndex - DatasetRef index (unused).

    • setProjectDescription

      void setProjectDescription​(java.lang.String description, int projectIndex)
      Set the Description property of Project.
      Parameters:
      description - Description to set.
      projectIndex - the Project index.

    • setProjectExperimenterGroupRef

      void setProjectExperimenterGroupRef​(java.lang.String experimenterGroup, int projectIndex)
      Set the ExperimenterGroupRef property of Project.
      Parameters:
      experimenterGroup - ExperimenterGroupRef to set.
      projectIndex - the Project index.

    • setProjectExperimenterRef

      void setProjectExperimenterRef​(java.lang.String experimenter, int projectIndex)
      Set the ExperimenterRef property of Project.
      Parameters:
      experimenter - ExperimenterRef to set.
      projectIndex - the Project index.

    • setProjectID

      void setProjectID​(java.lang.String id, int projectIndex)
      Set the ID property of Project.
      Parameters:
      id - ID to set.
      projectIndex - the Project index.

    • setProjectName

      void setProjectName​(java.lang.String name, int projectIndex)
      Set the Name property of Project.
      Parameters:
      name - Name to set.
      projectIndex - the Project index.

    • setROIAnnotationRef

      void setROIAnnotationRef​(java.lang.String annotation, int ROIIndex, int annotationRefIndex)
      Set the AnnotationRef property of ROI.
      Parameters:
      annotation - AnnotationRef to set.
      ROIIndex - the ROI index.
      annotationRefIndex - AnnotationRef index (unused).

    • setROIDescription

      void setROIDescription​(java.lang.String description, int ROIIndex)
      Set the Description property of ROI.
      Parameters:
      description - Description to set.
      ROIIndex - the ROI index.

    • setROIID

      void setROIID​(java.lang.String id, int ROIIndex)
      Set the ID property of ROI.
      Parameters:
      id - ID to set.
      ROIIndex - the ROI index.

    • setROIName

      void setROIName​(java.lang.String name, int ROIIndex)
      Set the Name property of ROI.
      Parameters:
      name - Name to set.
      ROIIndex - the ROI index.

    • setReagentAnnotationRef

      void setReagentAnnotationRef​(java.lang.String annotation, int screenIndex, int reagentIndex, int annotationRefIndex)
      Set the AnnotationRef property of Reagent.
      Parameters:
      annotation - AnnotationRef to set.
      screenIndex - the Screen index.
      reagentIndex - the Reagent index.
      annotationRefIndex - AnnotationRef index (unused).

    • setReagentDescription

      void setReagentDescription​(java.lang.String description, int screenIndex, int reagentIndex)
      Set the Description property of Reagent.
      Parameters:
      description - Description to set.
      screenIndex - the Screen index.
      reagentIndex - the Reagent index.

    • setReagentID

      void setReagentID​(java.lang.String id, int screenIndex, int reagentIndex)
      Set the ID property of Reagent.
      Parameters:
      id - ID to set.
      screenIndex - the Screen index.
      reagentIndex - the Reagent index.

    • setReagentName

      void setReagentName​(java.lang.String name, int screenIndex, int reagentIndex)
      Set the Name property of Reagent.
      Parameters:
      name - Name to set.
      screenIndex - the Screen index.
      reagentIndex - the Reagent index.

    • setReagentReagentIdentifier

      void setReagentReagentIdentifier​(java.lang.String reagentIdentifier, int screenIndex, int reagentIndex)
      Set the ReagentIdentifier property of Reagent.
      Parameters:
      reagentIdentifier - ReagentIdentifier to set.
      screenIndex - the Screen index.
      reagentIndex - the Reagent index.

    • setRectangleAnnotationRef

      void setRectangleAnnotationRef​(java.lang.String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)
      Set the AnnotationRef property of Rectangle.
      Parameters:
      annotation - AnnotationRef to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.
      annotationRefIndex - AnnotationRef index (unused).

    • setRectangleFillColor

      void setRectangleFillColor​(Color fillColor, int ROIIndex, int shapeIndex)
      Set the FillColor property of Rectangle.
      Parameters:
      fillColor - FillColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleFillRule

      void setRectangleFillRule​(FillRule fillRule, int ROIIndex, int shapeIndex)
      Set the FillRule property of Rectangle.
      Parameters:
      fillRule - FillRule to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleFontFamily

      void setRectangleFontFamily​(FontFamily fontFamily, int ROIIndex, int shapeIndex)
      Set the FontFamily property of Rectangle.
      Parameters:
      fontFamily - FontFamily to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleFontSize

      void setRectangleFontSize​(Length fontSize, int ROIIndex, int shapeIndex)
      Set the FontSize property of Rectangle.
      Parameters:
      fontSize - FontSize to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleFontStyle

      void setRectangleFontStyle​(FontStyle fontStyle, int ROIIndex, int shapeIndex)
      Set the FontStyle property of Rectangle.
      Parameters:
      fontStyle - FontStyle to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleHeight

      void setRectangleHeight​(java.lang.Double height, int ROIIndex, int shapeIndex)
      Set the Height property of Rectangle.
      Parameters:
      height - Height to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleID

      void setRectangleID​(java.lang.String id, int ROIIndex, int shapeIndex)
      Set the ID property of Rectangle.
      Parameters:
      id - ID to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleLocked

      void setRectangleLocked​(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
      Set the Locked property of Rectangle.
      Parameters:
      locked - Locked to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleStrokeColor

      void setRectangleStrokeColor​(Color strokeColor, int ROIIndex, int shapeIndex)
      Set the StrokeColor property of Rectangle.
      Parameters:
      strokeColor - StrokeColor to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleStrokeDashArray

      void setRectangleStrokeDashArray​(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
      Set the StrokeDashArray property of Rectangle.
      Parameters:
      strokeDashArray - StrokeDashArray to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleStrokeWidth

      void setRectangleStrokeWidth​(Length strokeWidth, int ROIIndex, int shapeIndex)
      Set the StrokeWidth property of Rectangle.
      Parameters:
      strokeWidth - StrokeWidth to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleText

      void setRectangleText​(java.lang.String text, int ROIIndex, int shapeIndex)
      Set the Text property of Rectangle.
      Parameters:
      text - Text to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleTheC

      void setRectangleTheC​(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
      Set the TheC property of Rectangle.
      Parameters:
      theC - TheC to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleTheT

      void setRectangleTheT​(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
      Set the TheT property of Rectangle.
      Parameters:
      theT - TheT to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleTheZ

      void setRectangleTheZ​(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
      Set the TheZ property of Rectangle.
      Parameters:
      theZ - TheZ to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleTransform

      void setRectangleTransform​(AffineTransform transform, int ROIIndex, int shapeIndex)
      Set the Transform property of Rectangle.
      Parameters:
      transform - Transform to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleWidth

      void setRectangleWidth​(java.lang.Double width, int ROIIndex, int shapeIndex)
      Set the Width property of Rectangle.
      Parameters:
      width - Width to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleX

      void setRectangleX​(java.lang.Double x, int ROIIndex, int shapeIndex)
      Set the X property of Rectangle.
      Parameters:
      x - X to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRectangleY

      void setRectangleY​(java.lang.Double y, int ROIIndex, int shapeIndex)
      Set the Y property of Rectangle.
      Parameters:
      y - Y to set.
      ROIIndex - the ROI index.
      shapeIndex - the Shape index.

    • setRightsRightsHeld

      void setRightsRightsHeld​(java.lang.String rightsHeld)
      Set the RightsHeld property of Rights.
      Parameters:
      rightsHeld - RightsHeld to set.

    • setRightsRightsHolder

      void setRightsRightsHolder​(java.lang.String rightsHolder)
      Set the RightsHolder property of Rights.
      Parameters:
      rightsHolder - RightsHolder to set.

    • setScreenAnnotationRef

      void setScreenAnnotationRef​(java.lang.String annotation, int screenIndex, int annotationRefIndex)
      Set the AnnotationRef property of Screen.
      Parameters:
      annotation - AnnotationRef to set.
      screenIndex - the Screen index.
      annotationRefIndex - AnnotationRef index (unused).

    • setScreenDescription

      void setScreenDescription​(java.lang.String description, int screenIndex)
      Set the Description property of Screen.
      Parameters:
      description - Description to set.
      screenIndex - the Screen index.

    • setScreenID

      void setScreenID​(java.lang.String id, int screenIndex)
      Set the ID property of Screen.
      Parameters:
      id - ID to set.
      screenIndex - the Screen index.

    • setScreenName

      void setScreenName​(java.lang.String name, int screenIndex)
      Set the Name property of Screen.
      Parameters:
      name - Name to set.
      screenIndex - the Screen index.

    • setScreenPlateRef

      void setScreenPlateRef​(java.lang.String plate, int screenIndex, int plateRefIndex)
      Set the PlateRef property of Screen.
      Parameters:
      plate - PlateRef to set.
      screenIndex - the Screen index.
      plateRefIndex - PlateRef index (unused).

    • setScreenProtocolDescription

      void setScreenProtocolDescription​(java.lang.String protocolDescription, int screenIndex)
      Set the ProtocolDescription property of Screen.
      Parameters:
      protocolDescription - ProtocolDescription to set.
      screenIndex - the Screen index.

    • setScreenProtocolIdentifier

      void setScreenProtocolIdentifier​(java.lang.String protocolIdentifier, int screenIndex)
      Set the ProtocolIdentifier property of Screen.
      Parameters:
      protocolIdentifier - ProtocolIdentifier to set.
      screenIndex - the Screen index.

    • setScreenReagentSetDescription

      void setScreenReagentSetDescription​(java.lang.String reagentSetDescription, int screenIndex)
      Set the ReagentSetDescription property of Screen.
      Parameters:
      reagentSetDescription - ReagentSetDescription to set.
      screenIndex - the Screen index.

    • setScreenReagentSetIdentifier

      void setScreenReagentSetIdentifier​(java.lang.String reagentSetIdentifier, int screenIndex)
      Set the ReagentSetIdentifier property of Screen.
      Parameters:
      reagentSetIdentifier - ReagentSetIdentifier to set.
      screenIndex - the Screen index.

    • setScreenType

      void setScreenType​(java.lang.String type, int screenIndex)
      Set the Type property of Screen.
      Parameters:
      type - Type to set.
      screenIndex - the Screen index.

    • setStageLabelName

      void setStageLabelName​(java.lang.String name, int imageIndex)
      Set the Name property of StageLabel.
      Parameters:
      name - Name to set.
      imageIndex - the Image index.

    • setStageLabelX

      void setStageLabelX​(Length x, int imageIndex)
      Set the X property of StageLabel.
      Parameters:
      x - X to set.
      imageIndex - the Image index.

    • setStageLabelY

      void setStageLabelY​(Length y, int imageIndex)
      Set the Y property of StageLabel.
      Parameters:
      y - Y to set.
      imageIndex - the Image index.

    • setStageLabelZ

      void setStageLabelZ​(Length z, int imageIndex)
      Set the Z property of StageLabel.
      Parameters:
      z - Z to set.
      imageIndex - the Image index.

    • setTagAnnotationAnnotationRef

      void setTagAnnotationAnnotationRef​(java.lang.String annotation, int tagAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of TagAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      tagAnnotationIndex - the TagAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setTagAnnotationAnnotator

      void setTagAnnotationAnnotator​(java.lang.String annotator, int tagAnnotationIndex)
      Set the Annotator property of TagAnnotation.
      Parameters:
      annotator - Annotator to set.
      tagAnnotationIndex - the TagAnnotation index.

    • setTagAnnotationDescription

      void setTagAnnotationDescription​(java.lang.String description, int tagAnnotationIndex)
      Set the Description property of TagAnnotation.
      Parameters:
      description - Description to set.
      tagAnnotationIndex - the TagAnnotation index.

    • setTagAnnotationID

      void setTagAnnotationID​(java.lang.String id, int tagAnnotationIndex)
      Set the ID property of TagAnnotation.
      Parameters:
      id - ID to set.
      tagAnnotationIndex - the TagAnnotation index.

    • setTagAnnotationNamespace

      void setTagAnnotationNamespace​(java.lang.String namespace, int tagAnnotationIndex)
      Set the Namespace property of TagAnnotation.
      Parameters:
      namespace - Namespace to set.
      tagAnnotationIndex - the TagAnnotation index.

    • setTagAnnotationValue

      void setTagAnnotationValue​(java.lang.String value, int tagAnnotationIndex)
      Set the Value property of TagAnnotation.
      Parameters:
      value - Value to set.
      tagAnnotationIndex - the TagAnnotation index.

    • setTermAnnotationAnnotationRef

      void setTermAnnotationAnnotationRef​(java.lang.String annotation, int termAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of TermAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      termAnnotationIndex - the TermAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setTermAnnotationAnnotator

      void setTermAnnotationAnnotator​(java.lang.String annotator, int termAnnotationIndex)
      Set the Annotator property of TermAnnotation.
      Parameters:
      annotator - Annotator to set.
      termAnnotationIndex - the TermAnnotation index.

    • setTermAnnotationDescription

      void setTermAnnotationDescription​(java.lang.String description, int termAnnotationIndex)
      Set the Description property of TermAnnotation.
      Parameters:
      description - Description to set.
      termAnnotationIndex - the TermAnnotation index.

    • setTermAnnotationID

      void setTermAnnotationID​(java.lang.String id, int termAnnotationIndex)
      Set the ID property of TermAnnotation.
      Parameters:
      id - ID to set.
      termAnnotationIndex - the TermAnnotation index.

    • setTermAnnotationNamespace

      void setTermAnnotationNamespace​(java.lang.String namespace, int termAnnotationIndex)
      Set the Namespace property of TermAnnotation.
      Parameters:
      namespace - Namespace to set.
      termAnnotationIndex - the TermAnnotation index.

    • setTermAnnotationValue

      void setTermAnnotationValue​(java.lang.String value, int termAnnotationIndex)
      Set the Value property of TermAnnotation.
      Parameters:
      value - Value to set.
      termAnnotationIndex - the TermAnnotation index.

    • setTiffDataFirstC

      void setTiffDataFirstC​(NonNegativeInteger firstC, int imageIndex, int tiffDataIndex)
      Set the FirstC property of TiffData.
      Parameters:
      firstC - FirstC to set.
      imageIndex - the Image index.
      tiffDataIndex - the TiffData index.

    • setTiffDataFirstT

      void setTiffDataFirstT​(NonNegativeInteger firstT, int imageIndex, int tiffDataIndex)
      Set the FirstT property of TiffData.
      Parameters:
      firstT - FirstT to set.
      imageIndex - the Image index.
      tiffDataIndex - the TiffData index.

    • setTiffDataFirstZ

      void setTiffDataFirstZ​(NonNegativeInteger firstZ, int imageIndex, int tiffDataIndex)
      Set the FirstZ property of TiffData.
      Parameters:
      firstZ - FirstZ to set.
      imageIndex - the Image index.
      tiffDataIndex - the TiffData index.

    • setTiffDataIFD

      void setTiffDataIFD​(NonNegativeInteger ifd, int imageIndex, int tiffDataIndex)
      Set the IFD property of TiffData.
      Parameters:
      ifd - IFD to set.
      imageIndex - the Image index.
      tiffDataIndex - the TiffData index.

    • setTiffDataPlaneCount

      void setTiffDataPlaneCount​(NonNegativeInteger planeCount, int imageIndex, int tiffDataIndex)
      Set the PlaneCount property of TiffData.
      Parameters:
      planeCount - PlaneCount to set.
      imageIndex - the Image index.
      tiffDataIndex - the TiffData index.

    • setTimestampAnnotationAnnotationRef

      void setTimestampAnnotationAnnotationRef​(java.lang.String annotation, int timestampAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of TimestampAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      timestampAnnotationIndex - the TimestampAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setTimestampAnnotationAnnotator

      void setTimestampAnnotationAnnotator​(java.lang.String annotator, int timestampAnnotationIndex)
      Set the Annotator property of TimestampAnnotation.
      Parameters:
      annotator - Annotator to set.
      timestampAnnotationIndex - the TimestampAnnotation index.

    • setTimestampAnnotationDescription

      void setTimestampAnnotationDescription​(java.lang.String description, int timestampAnnotationIndex)
      Set the Description property of TimestampAnnotation.
      Parameters:
      description - Description to set.
      timestampAnnotationIndex - the TimestampAnnotation index.

    • setTimestampAnnotationID

      void setTimestampAnnotationID​(java.lang.String id, int timestampAnnotationIndex)
      Set the ID property of TimestampAnnotation.
      Parameters:
      id - ID to set.
      timestampAnnotationIndex - the TimestampAnnotation index.

    • setTimestampAnnotationNamespace

      void setTimestampAnnotationNamespace​(java.lang.String namespace, int timestampAnnotationIndex)
      Set the Namespace property of TimestampAnnotation.
      Parameters:
      namespace - Namespace to set.
      timestampAnnotationIndex - the TimestampAnnotation index.

    • setTimestampAnnotationValue

      void setTimestampAnnotationValue​(Timestamp value, int timestampAnnotationIndex)
      Set the Value property of TimestampAnnotation.
      Parameters:
      value - Value to set.
      timestampAnnotationIndex - the TimestampAnnotation index.

    • setTransmittanceRangeCutIn

      void setTransmittanceRangeCutIn​(Length cutIn, int instrumentIndex, int filterIndex)
      Set the CutIn property of TransmittanceRange.
      Parameters:
      cutIn - CutIn to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setTransmittanceRangeCutInTolerance

      void setTransmittanceRangeCutInTolerance​(Length cutInTolerance, int instrumentIndex, int filterIndex)
      Set the CutInTolerance property of TransmittanceRange.
      Parameters:
      cutInTolerance - CutInTolerance to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setTransmittanceRangeCutOut

      void setTransmittanceRangeCutOut​(Length cutOut, int instrumentIndex, int filterIndex)
      Set the CutOut property of TransmittanceRange.
      Parameters:
      cutOut - CutOut to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setTransmittanceRangeCutOutTolerance

      void setTransmittanceRangeCutOutTolerance​(Length cutOutTolerance, int instrumentIndex, int filterIndex)
      Set the CutOutTolerance property of TransmittanceRange.
      Parameters:
      cutOutTolerance - CutOutTolerance to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setTransmittanceRangeTransmittance

      void setTransmittanceRangeTransmittance​(PercentFraction transmittance, int instrumentIndex, int filterIndex)
      Set the Transmittance property of TransmittanceRange.
      Parameters:
      transmittance - Transmittance to set.
      instrumentIndex - the Instrument index.
      filterIndex - the Filter index.

    • setUUIDValue

      void setUUIDValue​(java.lang.String value, int imageIndex, int tiffDataIndex)
      Set the text value of UUID.
      Parameters:
      value - text value.
      imageIndex - the Image index.
      tiffDataIndex - the TiffData index.

    • setUUIDFileName

      void setUUIDFileName​(java.lang.String fileName, int imageIndex, int tiffDataIndex)
      Set the FileName property of UUID.
      Parameters:
      fileName - FileName to set.
      imageIndex - the Image index.
      tiffDataIndex - the TiffData index.

    • setWellAnnotationRef

      void setWellAnnotationRef​(java.lang.String annotation, int plateIndex, int wellIndex, int annotationRefIndex)
      Set the AnnotationRef property of Well.
      Parameters:
      annotation - AnnotationRef to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.
      annotationRefIndex - AnnotationRef index (unused).

    • setWellColor

      void setWellColor​(Color color, int plateIndex, int wellIndex)
      Set the Color property of Well.
      Parameters:
      color - Color to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.

    • setWellColumn

      void setWellColumn​(NonNegativeInteger column, int plateIndex, int wellIndex)
      Set the Column property of Well.
      Parameters:
      column - Column to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.

    • setWellExternalDescription

      void setWellExternalDescription​(java.lang.String externalDescription, int plateIndex, int wellIndex)
      Set the ExternalDescription property of Well.
      Parameters:
      externalDescription - ExternalDescription to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.

    • setWellExternalIdentifier

      void setWellExternalIdentifier​(java.lang.String externalIdentifier, int plateIndex, int wellIndex)
      Set the ExternalIdentifier property of Well.
      Parameters:
      externalIdentifier - ExternalIdentifier to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.

    • setWellID

      void setWellID​(java.lang.String id, int plateIndex, int wellIndex)
      Set the ID property of Well.
      Parameters:
      id - ID to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.

    • setWellReagentRef

      void setWellReagentRef​(java.lang.String reagent, int plateIndex, int wellIndex)
      Set the ReagentRef property of Well.
      Parameters:
      reagent - ReagentRef to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.

    • setWellRow

      void setWellRow​(NonNegativeInteger row, int plateIndex, int wellIndex)
      Set the Row property of Well.
      Parameters:
      row - Row to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.

    • setWellType

      void setWellType​(java.lang.String type, int plateIndex, int wellIndex)
      Set the Type property of Well.
      Parameters:
      type - Type to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.

    • setWellSampleID

      void setWellSampleID​(java.lang.String id, int plateIndex, int wellIndex, int wellSampleIndex)
      Set the ID property of WellSample.
      Parameters:
      id - ID to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.
      wellSampleIndex - the WellSample index.

    • setWellSampleImageRef

      void setWellSampleImageRef​(java.lang.String image, int plateIndex, int wellIndex, int wellSampleIndex)
      Set the ImageRef property of WellSample.
      Parameters:
      image - ImageRef to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.
      wellSampleIndex - the WellSample index.

    • setWellSampleIndex

      void setWellSampleIndex​(NonNegativeInteger index, int plateIndex, int wellIndex, int wellSampleIndex)
      Set the Index property of WellSample.
      Parameters:
      index - Index to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.
      wellSampleIndex - the WellSample index.

    • setWellSamplePositionX

      void setWellSamplePositionX​(Length positionX, int plateIndex, int wellIndex, int wellSampleIndex)
      Set the PositionX property of WellSample.
      Parameters:
      positionX - PositionX to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.
      wellSampleIndex - the WellSample index.

    • setWellSamplePositionY

      void setWellSamplePositionY​(Length positionY, int plateIndex, int wellIndex, int wellSampleIndex)
      Set the PositionY property of WellSample.
      Parameters:
      positionY - PositionY to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.
      wellSampleIndex - the WellSample index.

    • setWellSampleTimepoint

      void setWellSampleTimepoint​(Timestamp timepoint, int plateIndex, int wellIndex, int wellSampleIndex)
      Set the Timepoint property of WellSample.
      Parameters:
      timepoint - Timepoint to set.
      plateIndex - the Plate index.
      wellIndex - the Well index.
      wellSampleIndex - the WellSample index.

    • setXMLAnnotationAnnotationRef

      void setXMLAnnotationAnnotationRef​(java.lang.String annotation, int XMLAnnotationIndex, int annotationRefIndex)
      Set the AnnotationRef property of XMLAnnotation.
      Parameters:
      annotation - AnnotationRef to set.
      XMLAnnotationIndex - the XMLAnnotation index.
      annotationRefIndex - AnnotationRef index (unused).

    • setXMLAnnotationAnnotator

      void setXMLAnnotationAnnotator​(java.lang.String annotator, int XMLAnnotationIndex)
      Set the Annotator property of XMLAnnotation.
      Parameters:
      annotator - Annotator to set.
      XMLAnnotationIndex - the XMLAnnotation index.

    • setXMLAnnotationDescription

      void setXMLAnnotationDescription​(java.lang.String description, int XMLAnnotationIndex)
      Set the Description property of XMLAnnotation.
      Parameters:
      description - Description to set.
      XMLAnnotationIndex - the XMLAnnotation index.

    • setXMLAnnotationID

      void setXMLAnnotationID​(java.lang.String id, int XMLAnnotationIndex)
      Set the ID property of XMLAnnotation.
      Parameters:
      id - ID to set.
      XMLAnnotationIndex - the XMLAnnotation index.

    • setXMLAnnotationNamespace

      void setXMLAnnotationNamespace​(java.lang.String namespace, int XMLAnnotationIndex)
      Set the Namespace property of XMLAnnotation.
      Parameters:
      namespace - Namespace to set.
      XMLAnnotationIndex - the XMLAnnotation index.

    • setXMLAnnotationValue

      void setXMLAnnotationValue​(java.lang.String value, int XMLAnnotationIndex)
      Set the Value property of XMLAnnotation.
      Parameters:
      value - Value to set.
      XMLAnnotationIndex - the XMLAnnotation index.