Buffer provides a mutable data structure specialized on several primitive types.
Buffer provides a mutable data structure specialized on several primitive types.
Appending an element takes amortized constant time, and the buffer instance can
be converted to an array either implicitly or explicitly via toArray
.
Shorthand for class manifest typeclass
Frame
is an immutable container for 2D data which is indexed along both axes
(rows, columns) by associated keys (i.e., indexes).
Frame
is an immutable container for 2D data which is indexed along both axes
(rows, columns) by associated keys (i.e., indexes).
The primary use case is homogeneous data, but a secondary concern is to support heterogeneous data that is homogeneous ony within any given column.
The row index, column index, and constituent value data are all backed ultimately by arrays.
Frame
is effectively a doubly-indexed associative map whose row keys and col keys
each have an ordering provided by the natural (provided) order of their backing
arrays.
Several factory and access methods are provided. In the following examples, assume that:
val f = Frame('a'->Vec(1,2,3), 'b'->Vec(4,5,6))
The apply
method takes a row and col key returns a slice of the original Frame:
f(0,'a') == Frame('a'->Vec(1))
apply
also accepts a org.saddle.index.Slice:
f(0->1, 'b') == Frame('b'->Vec(4,5)) f(0, *) == Frame('a'->Vec(1), 'b'->Vec(4))
You may slice using the col
and row
methods respectively, as follows:
f.col('a') == Frame('a'->Vec(1,2,3)) f.row(0) == Frame('a'->Vec(1), 'b'->Vec(4)) f.row(0->1) == Frame('a'->Vec(1,2), 'b'->Vec(4,5))
You can achieve a similar effect with rowSliceBy
and colSliceBy
The colAt
and rowAt
methods take an integer offset i into the Frame, and
return a Series indexed by the opposing axis:
f.rowAt(0) == Series('a'->1, 'b'->4)
If there is a one-to-one relationship between offset i and key (ie, no duplicate keys in the index), you may achieve the same effect via key as follows:
f.first(0) == Series('a'->1, 'b'->4) f.firstCol('a') == Series(1,2,3)
The at
method returns an instance of a org.saddle.scalar.Scalar, which behaves
much like an Option
; it can be either an instance of org.saddle.scalar.NA or a
org.saddle.scalar.Value case class:
f.at(0, 0) == scalar.Scalar(1)
The rowSlice
and colSlice
methods allows slicing the Frame for locations in [i, j)
irrespective of the value of the keys at those locations.
f.rowSlice(0,1) == Frame('a'->Vec(1), 'b'->Vec(4))
Finally, the method raw
accesses a value directly, which may reveal the underlying
representation of a missing value (so be careful).
f.raw(0,0) == 1
Frame
may be used in arithmetic expressions which operate on two Frame
s or on a
Frame
and a scalar value. In the former case, the two Frames will automatically
align along their indexes:
f + f.shift(1) == Frame('a'->Vec(NA,3,5), 'b'->Vec(NA,9,11))
The type of row keys
The type of column keys
The type of entries in the frame
Index provides a constant-time look-up of a value within array-backed storage, as well as operations to support joining and slicing.
Mat
is an immutable container for 2D homogeneous data (a "matrix").
Mat
is an immutable container for 2D homogeneous data (a "matrix"). It is
backed by a single array. Data is stored in row-major order.
Several element access methods are provided.
The at
method returns an instance of a org.saddle.scalar.Scalar, which behaves
much like an Option
in that it can be either an instance of org.saddle.scalar.NA
or a org.saddle.scalar.Value case class:
val m = Mat(2,2,Array(1,2,3,4)) m.at(0,0) == Value(1)
The method raw
accesses the underlying value directly.
val m = Mat(2,2,Array(1,2,3,4)) m.raw(0,0) == 1d
Mat
may be used in arithemetic expressions which operate on two Mat
s or on a
Mat
and a primitive value. A fe examples:
val m = Mat(2,2,Array(1,2,3,4)) m * m == Mat(2,2,Array(1,4,9,16)) m dot m == Mat(2,2,Array(7d,10,15,22)) m * 3 == Mat(2, 2, Array(3,6,9,12))
Note, Mat is generally compatible with EJML's DenseMatrix. It may be convenient to induce this conversion to do more complex linear algebra, or to work with a mutable data structure.
Type of elements within the Mat
Shorthand for numeric typeclass
Shorthand for ordering typeclass
Shorthand for scalar tag typeclass
Series
is an immutable container for 1D homogeneous data which is indexed by a
an associated sequence of keys.
Series
is an immutable container for 1D homogeneous data which is indexed by a
an associated sequence of keys.
Both the index and value data are backed by arrays.
Series
is effectively an associative map whose keys have an ordering provided by
the natural (provided) order of the backing array.
Several element access methods are provided.
The apply
method returns a slice of the original Series:
val s = Series(Vec(1,2,3,4), Index('a','b','b','c')) s('a') == Series('a'->1) s('b') == Series('b'->2, 'b'->3)
Other ways to slice a series involve implicitly constructing an org.saddle.index.Slice object and passing it to the Series apply method:
s('a'->'b') == Series('a'->1, 'b'->2, 'b'->3) s(* -> 'b') == Series('a'->1, 'b'->2, 'b'->3) s('b' -> *) == Series('b'->2, 'b'->3, 'c'->4) s(*) == s
The at
method returns an instance of a org.saddle.scalar.Scalar, which behaves
much like an Option
in that it can be either an instance of org.saddle.scalar.NA
or a org.saddle.scalar.Value case class:
s.at(0) == Scalar(1)
The slice
method allows slicing the Series for locations in [i, j) irrespective of
the value of the keys at those locations.
s.slice(2,4) == Series('b'->3, 'c'->4)
To slice explicitly by labels, use the sliceBy
method, which is inclusive of the
key boundaries:
s.sliceBy('b','c') == Series('b'->3, 'c'->4)
The method raw
accesses the value directly, which may reveal the underlying representation
of a missing value (so be careful).
s.raw(0) == 1
Series
may be used in arithmetic expressions which operate on two Series
or on a
Series
and a scalar value. In the former case, the two Series will automatically
align along their indexes. A few examples:
s * 2 == Series('a'->2, 'b'->4, ... ) s + s.shift(1) == Series('a'->NA, 'b'->3, 'b'->5, ...)
Type of elements in the index, for which there must be an implicit Ordering and ST
Type of elements in the values array, for which there must be an implicit ST
Vec
is an immutable container for 1D homogeneous data (a "vector").
Vec
is an immutable container for 1D homogeneous data (a "vector"). It is
backed by an array and indexed from 0 to length - 1.
Several element access methods are provided.
The apply()
method returns a slice of the original vector:
val v = Vec(1,2,3,4) v(0) == Vec(1) v(1, 2) == Vec(2,3)
The at
method returns an instance of a org.saddle.scalar.Scalar, which behaves
much like an Option
in that it can be either an instance of org.saddle.scalar.NA
or a org.saddle.scalar.Value case class:
Vec[Int](1,2,3,na).at(0) == Scalar(1) Vec[Int](1,2,3,na).at(3) == NA
The method raw
accesses the underlying value directly.
Vec(1d,2,3).raw(0) == 1d
Vec
may be used in arithemetic expressions which operate on two Vec
s or on a
Vec
and a scalar value. A few examples:
Vec(1,2,3,4) + Vec(2,3,4,5) == Vec(3,5,7,9) Vec(1,2,3,4) * 2 == Vec(2,4,6,8)
Note, Vec is implicitly convertible to an array for convenience; this could be abused to mutate the contents of the Vec. Try to avoid this!
Type of elements within the Vec
Syntactic sugar, placeholder for 'slice-all'
Syntactic sugar, placeholder for 'slice-all'
val v = Vec(1,2,3, 4) val u = v(*)
Convenience constructors for a Frame[RX, CX, Any] that accept arbitrarily-typed Vectors and Series as constructor parameters, leaving their internal representations unchanged.
Constant used in string byte-level manipulation
This package contains utilities for working with arrays that are specialized for numeric types.
Allow timing of an operation
Allow timing of an operation
clock { bigMat.T dot bigMat }
na
provides syntactic sugar for constructing primitives recognized as NA.
na
provides syntactic sugar for constructing primitives recognized as NA.
A use case is be:
Vec[Int](1,2,na,4)
na
will implicitly convert to a primitive having the designated missing
value bit pattern. That pattern is as follows:
The NA bit pattern for integral types is MinValue
because it induces a
symmetry on the remaining bound of values; e.g. the remaining Byte
bound
is (-127, +127).
Note since Boolean
s can only take on two values, it has no na
primitive
bit pattern.
Provides type aliases for a few basic operations
Syntactic sugar, allow '->' to generate an (inclusive) index slice
Syntactic sugar, allow '->' to generate an (inclusive) index slice
val v = Vec(1,2,3,4) val u = v(0 -> 2)
Syntactic sugar, allow ' -> *' to generate an (inclusive) index slice, open on right
Syntactic sugar, allow ' -> *' to generate an (inclusive) index slice, open on right
val v = Vec(1,2,3,4) val u = v(1 -> *)
Provides for one-element slicing, e.g.
Provides for one-element slicing, e.g.
val v = Vec(1,2,3, 4) val u = v(1)
Syntactic sugar, allow '* -> ' to generate an (inclusive) index slice, open on left
Syntactic sugar, allow '* -> ' to generate an (inclusive) index slice, open on left
val v = Vec(1,2,3,4) val u = v(* -> 2)
Augments Seq with a toFrame method that returns a new Frame instance.
Augments Seq with a toFrame method that returns a new Frame instance.
For example,
val t = IndexedSeq(("a", "x", 3), ("b", "y", 4)) val f = t.toFrame res0: org.saddle.Frame[java.lang.String,java.lang.String,Int] = [2 x 2] x y -- -- a -> 3 NA b -> NA 4
Type of row index elements of Frame
Type of col index elements of Frame
Type of data elements of Frame
A value of type Seq[(RX, CX, T)]
Augments Seq with a toIndex method that returns a new Index instance.
Augments Seq with a toIndex method that returns a new Index instance.
For example,
val i = IndexedSeq(1,2,3) val s = i.toIndex
Type of index elements
A value of type Seq[X]
Augments Seq with a toSeries method that returns a new Series instance.
Augments Seq with a toSeries method that returns a new Series instance.
For example,
val p = IndexedSeq(1,2,3) zip IndexedSeq(4,5,6) val s = p.toSeries
Type of data elements of Series
Type of index elements of Series
A value of type Seq[(X, T)]
Augments Seq with a toVec method that returns a new Vec instance.
Augments Seq with a toVec method that returns a new Vec instance.
For example,
val s = IndexedSeq(1,2,3) val v = s.toVec
Type of elements of Vec
A value of type Seq[T]
Functionality to assist in TimeSeries related operations
Additional utilities that need a home
Factory methods to generate Vec instances
Saddle
Saddle is a Scala Data Library.
Saddle provides array-backed, indexed one- and two-dimensional data structures.
These data structures are specialized on JVM primitives. With them one can often avoid the overhead of boxing and unboxing.
Basic operations also aim to be robust to missing values (NA's)
The building blocks are intended to be easily composed.
Additionally, there are some numerical utilities: eg, a fast suite of org.saddle.util.Random number generators).
The foundational building blocks are:
Inspiration for Saddle comes from many sources, including the R programming language, the pandas data analysis library for Python, and the Scala collections library.