Package htsjdk.variant.variantcontext.writer

Class BCF2FieldWriter.FTGenotypesWriter

java.lang.Object

htsjdk.variant.variantcontext.writer.BCF2FieldWriter

htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter

htsjdk.variant.variantcontext.writer.BCF2FieldWriter.StaticallyTypeGenotypesWriter

htsjdk.variant.variantcontext.writer.BCF2FieldWriter.FTGenotypesWriter

Enclosing class:

BCF2FieldWriter

public static class BCF2FieldWriter.FTGenotypesWriter
extends BCF2FieldWriter.StaticallyTypeGenotypesWriter

Nested Class Summary

Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter

Constructor Summary

Constructors

Constructor	Description
FTGenotypesWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)

Method Summary

Modifier and Type	Method	Description
void	addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)
protected int	numElements(VariantContext vc, Genotype g)

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter

start

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

done, getField, getFieldEncoder, getHeader, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

FTGenotypesWriter

public FTGenotypesWriter(VCFHeader header,
 BCF2FieldEncoder fieldEncoder)

Method Details

addGenotype

public void addGenotype(BCF2Encoder encoder,
 VariantContext vc,
 Genotype g)
                 throws IOException

Overrides:

addGenotype in class BCF2FieldWriter.GenotypesWriter

Throws:

IOException

numElements

protected int numElements(VariantContext vc,
 Genotype g)

Overrides:

numElements in class BCF2FieldWriter.GenotypesWriter