Class/Object

au.csiro.variantspark.algo

WideKMeans

Related Docs: object WideKMeans | package algo

Permalink

class WideKMeans extends AnyRef

A class to implement a Wide K-Means.

Specify the k and iterations then access the fields like this:

val wKM = WideKMeans(5, 10)
val clusterCenters = wKM.run(data)
val resultingClusters = wKM.assignClusters(data, clusterCenters)
Linear Supertypes
AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. WideKMeans
  2. AnyRef
  3. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new WideKMeans(k: Int, iterations: Int)

    Permalink

    k

    the number of desired clusters

    iterations

    the number of iterations requested

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any
  5. def assignClusters(data: RDD[Vector], clusterCenters: RDD[Vector]): Array[Int]

    Permalink

    Assigns points to specific clusters using vectors found from clusterCentres

    Assigns points to specific clusters using vectors found from clusterCentres

    data

    original data input

    clusterCenters

    result of the run function

    returns

    returns the cluster assignments

  6. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  8. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  9. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any
  11. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  12. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any
  13. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  14. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef
  15. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef
  16. def run(data: RDD[Vector]): RDD[Vector]

    Permalink

    Specify the input data

    Specify the input data

    1. Splits the vectors into k dense vectors 2. Finds the Euclidean distance between the new center and the values on the graph 3. Assigns values with lowest distances to the clusters 4. Creates new dense vectors with the values found 5. Repeats till the number of iterations is met

    data

    Input an RDD[Vector]

    returns

    Returns the cluster centers as a RDD[Vector]

  17. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef
  18. def toString(): String

    Permalink
    Definition Classes
    AnyRef → Any
  19. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from AnyRef

Inherited from Any

Ungrouped