1. au
   1. au.csiro
      1. au.csiro.pbdava
         1. au.csiro.pbdava.ssparkle
            1. au.csiro.pbdava.ssparkle.common
               1. au.csiro.pbdava.ssparkle.common.arg4j
                  1. (object)(trait)AppRunner
                  2. (trait)AppRunner2
                  3. (trait)TestArgs
               2. au.csiro.pbdava.ssparkle.common.utils
                  1. (object)
                     FastUtilConversions
                  2. (object)
                     LoanUtils
                  3. (trait)Logging
                  4. (class)Long2DoubleOpenHashMap2Map
                  5. (object)
                     MiscUtils
                  6. (trait)Prof
                  7. (object)(class)ReusablePrintStream
                  8. (object)
                     SerialUtils
                  9. (object)
                     Timed
                  10. (case class)TimedResult
                  11. (case class)Timer
            2. au.csiro.pbdava.ssparkle.spark
               1. (trait)SparkApp
               2. (object)
                  SparkUtils
      2. au.csiro.sparkle
         1. au.csiro.sparkle.cmd
            1. (class)CmdApp
            2. (class)DefaultObjectFactory
            3. (class)MultiCmdApp
         2. au.csiro.sparkle.common
            1. (class)LoanUtils
            2. (trait)ObjectFactory
            3. (class)ObjectProvider
            4. (class)ScalaUtils
            5. (class)ThrowingConsumer
            6. (class)ThrowingFunction
            1. au.csiro.sparkle.common.args4j
               1. (class)ArgsApp
               2. (class)ArgsObjectFactory
               3. (class)DateOptionHandler
               4. (trait)HasUsage
               5. (class)IntListOptionHandler
               6. (class)ObjectOptionHandler
               7. (class)RegisterHandlers
         3. au.csiro.sparkle.spark
            1. (class)AppContext
            2. (class)Counter
            3. (class)Long2LongAccumulableParam
            4. (class)SparkleJavaApp
            5. (trait)SparkTask
            6. (class)SparkUtils
      3. au.csiro.variantspark
         1. au.csiro.variantspark.algo
            1. (class)ArrayOps
            2. (trait)BatchTreeModel
            3. (object)
               BitwiseAndPairwiseRevMetric
            4. (trait)CanSplit
            5. (class)CanSplitArrayByte
            6. (class)CanSplitVector
            7. (trait)ClassificationSplitter
            8. (object)(class)DecisionTree
            9. (object)(class)DecisionTreeModel
            10. (class)DecisionTreeNode
            11. (case class)DecisionTreeParams
            12. (case class)DeterministicMerger
            13. (object)
                EucledianPairwiseMetric
            14. (class)FastGini
            15. (object)
                IdentityVarImportanceNormalizer
            16. (class)JClassificationSplitter
            17. (class)JConfusionClassificationSplitter
            18. (class)JMaskedClassificationSplitter
            19. (object)(case class)LeafNode
            20. (object)
                ManhattanPairwiseMetric
            21. (trait)Merger
            22. (object)
                MultiPairwiseRevMetric
            23. (case class)PairWiseAggregator
            24. (object)(class)PairwiseDistance
            25. (trait)PairwiseMetric
            26. (trait)PredictiveModel
            27. (trait)PredictiveModelWithImportance
            28. (object)(class)RandomForest
            29. (trait)RandomForestCallback
            30. (case class)RandomForestMember
            31. (case class)RandomForestModel
            32. (case class)RandomForestParams
            33. (case class)RandomizingMerger
            34. (case class)SplitInfo
            35. (object)(case class)SplitNode
            36. (class)StandardImportanceNormalizer
            37. (case class)SubsetInfo
            38. (object)
                To100ImportanceNormalizer
            39. (object)
                ToOneImportanceNormalizer
            40. (case class)VariableSplitter
            41. (trait)VarImportanceNormalizer
            42. (object)(case class)VarSplitInfo
            43. (case class)VotingAggregator
            44. (object)(class)WideKMeans
         2. au.csiro.variantspark.api
            1. (object)(class)ImportanceAnalysis
            2. (object)(class)VSContext
         3. au.csiro.variantspark.cli
            1. (object)(class)AnalyzeRFCmd
            2. (object)(class)BuildVarIndexCmd
            3. (object)(class)CochranArmanCmd
            4. (object)(class)ConvertCmd
            5. (object)(class)FilterCmd
            6. (object)(class)GenerateFeaturesCmd
            7. (object)(class)GenerateLabelsCmd
            8. (object)(class)GenerateLabelsNoiseCmd
            9. (object)(class)ImportanceCmd
            10. (object)
                IndexAccumulator
            11. (object)(class)PairWiseDistanceCmd
            12. (object)(class)TestCmd
            13. (object)(class)VariantSparkApp
            14. (object)(class)VcfToLabels
            1. au.csiro.variantspark.cli.args
               1. (trait)FeatureSourceArgs
               2. (trait)LabelSourceArgs
               3. (trait)SparkArgs
         4. au.csiro.variantspark.cmd
            1. (trait)Echoable
            2. (object)
               EchoUtils
         5. au.csiro.variantspark.data
            1. (case class)BoundedOrdinal
            2. (case class)Factor
            3. (object)
               UnboundedOrdinal
            4. (trait)VariableType
         6. au.csiro.variantspark.input
            1. (case class)CsvFeatureSource
            2. (class)CsvLabelSource
            3. (object)(class)DefaultCSVFormatSpec
            4. (class)DelegatingLineIterator
            5. (class)ExtendedVCFCodec
            6. (case class)Feature
            7. (trait)FeatureSource
            8. (class)HashingLabelSource
            9. (case class)HeaderAndVersion
            10. (trait)LabelSource
            11. (case class)ParquetFeatureSource
            12. (object)(class)VCFFeatureSource
            13. (object)(class)VCFSource
            14. (case class)VectorFeature
            1. au.csiro.variantspark.input.generate
               1. (object)(class)EffectLabelGenerator
               2. (object)(class)NoisyEffectLabelGenerator
               3. (case class)OrdinalFeatureGenerator
         7. au.csiro.variantspark.metrics
            1. (object)
               Gini
            2. (object)
               Metrics
         8. au.csiro.variantspark.output
            1. (case class)CSVFeatureSink
            2. (case class)CSVFeatureSink2
            3. (trait)FeatureSink
            4. (class)ParquetFeatureSink
         9. au.csiro.variantspark.stats
            1. (class)CochranArmitageTest
            2. (object)(class)CochranArmitageTestCalculator
            3. (class)CochranArmitageTestScorer
         10. au.csiro.variantspark.tests
             1. (object)
                TestWideDecisionTree
             2. (object)
                TestWideKMeans
         11. au.csiro.variantspark.utils
             1. (trait)CanSize
             2. (object)
                CV
             3. (object)(case class)FactorVariable
             4. (object)(class)HdfsPath
             5. (object)(class)IndexedRDDFunction
             6. (class)IndexedVectorRDDFunction
             7. (object)(class)Projector
             8. (object)
                RDDProjections
             9. (object)(class)Sample
             10. (object)
                 Sampling
             11. (object)(class)VectorRDDFunction
         12. au.csiro.variantspark.work
             1. (object)
                Appl
             2. (object)
                BreezeTest
             3. (object)
                CaseTest
             4. (object)
                DataSetTest
             5. (class)ImplicitTest
             6. (object)(class)Sampler
             7. (object)
                StreamTest
             8. (object)
                VcfReaderTest
2. breeze
   1. breeze.stats