au
.
csiro
.
variantspark
.
cli
BuildVarIndexCmd
Related Docs:
object BuildVarIndexCmd
|
package cli
class
BuildVarIndexCmd
extends
ArgsApp
with
FeatureSourceArgs
with
Logging
with
TestArgs
Linear Supertypes
TestArgs
,
FeatureSourceArgs
,
Echoable
,
SparkArgs
,
SparkApp
,
Logging
,
ArgsApp
,
CmdApp
,
AnyRef
,
Any
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Inherited
BuildVarIndexCmd
TestArgs
FeatureSourceArgs
Echoable
SparkArgs
SparkApp
Logging
ArgsApp
CmdApp
AnyRef
Any
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Public
All
Instance Constructors
new
BuildVarIndexCmd
()
Value Members
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
val
beSilent
:
Boolean
Definition Classes
Echoable
val
beVerbose
:
Boolean
Definition Classes
Echoable
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
lazy val
conf
:
SparkConf
Definition Classes
SparkApp
def
defaultMasterUrl
:
String
Definition Classes
SparkApp
def
echo
(
msg: ⇒
String
)
:
Unit
Definition Classes
Echoable
def
echoDataPreview
()
:
Unit
Definition Classes
FeatureSourceArgs
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
lazy val
featureSource
:
FeatureSource
Definition Classes
FeatureSourceArgs
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
Definition Classes
AnyRef → Any
def
hashCode
()
:
Int
Definition Classes
AnyRef → Any
val
inputFile
:
String
Definition Classes
FeatureSourceArgs
val
inputType
:
String
Definition Classes
FeatureSourceArgs
def
isEcho
:
Boolean
Definition Classes
Echoable
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
def
isSilent
:
Boolean
Definition Classes
Echoable
def
isTraceEnabled
()
:
Boolean
Attributes
protected
Definition Classes
Logging
def
isVerbose
:
Boolean
Definition Classes
Echoable
def
loadCSV
()
:
CsvFeatureSource
Definition Classes
FeatureSourceArgs
def
loadParquet
()
:
ParquetFeatureSource
Definition Classes
FeatureSourceArgs
def
loadVCF
()
:
VCFFeatureSource
Definition Classes
FeatureSourceArgs
def
log
:
Logger
Attributes
protected
Definition Classes
Logging
def
logDebug
(
msg: ⇒
String
,
throwable:
Throwable
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logDebug
(
msg: ⇒
String
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logError
(
msg: ⇒
String
,
throwable:
Throwable
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logError
(
msg: ⇒
String
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logInfo
(
msg: ⇒
String
,
throwable:
Throwable
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logInfo
(
msg: ⇒
String
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logName
:
String
Attributes
protected
Definition Classes
Logging
def
logTrace
(
msg: ⇒
String
,
throwable:
Throwable
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logTrace
(
msg: ⇒
String
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logWarning
(
msg: ⇒
String
,
throwable:
Throwable
)
:
Unit
Attributes
protected
Definition Classes
Logging
def
logWarning
(
msg: ⇒
String
)
:
Unit
Attributes
protected
Definition Classes
Logging
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
val
outputIndex
:
String
def
run
()
:
Unit
Definition Classes
BuildVarIndexCmd
→
ArgsApp
Annotations
@Override
()
def
run
(
args:
Array
[
String
]
)
:
Unit
Attributes
protected[
au.csiro.sparkle.common.args4j
]
Definition Classes
ArgsApp
→
CmdApp
def
runApp
(
args:
Array
[
String
]
)
:
Unit
Attributes
protected[
au.csiro.sparkle.cmd
]
Definition Classes
CmdApp
implicit
lazy val
spark
:
SparkSession
Definition Classes
SparkApp
val
sparkPar
:
Int
Definition Classes
SparkArgs
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
testArgs
:
Array
[
String
]
Definition Classes
BuildVarIndexCmd
→
TestArgs
Annotations
@Override
()
def
toString
()
:
String
Definition Classes
AnyRef → Any
def
usage
()
:
Unit
Attributes
protected[
au.csiro.sparkle.common.args4j
]
Definition Classes
ArgsApp
→
CmdApp
def
verbose
(
msg: ⇒
String
)
:
Unit
Definition Classes
Echoable
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
def
warn
(
msg: ⇒
String
)
:
Unit
Definition Classes
Echoable
Deprecated Value Members
implicit
lazy val
sc
:
SparkContext
Definition Classes
SparkApp
Annotations
@deprecated
Deprecated
lazy val
sqlContext
:
SQLContext
Definition Classes
SparkApp
Annotations
@deprecated
Deprecated
Inherited from
TestArgs
Inherited from
FeatureSourceArgs
Inherited from
Echoable
Inherited from
SparkArgs
Inherited from
SparkApp
Inherited from
Logging
Inherited from
ArgsApp
Inherited from
CmdApp
Inherited from
AnyRef
Inherited from
Any
Ungrouped