Nucleic acids are defined by three distinct elements: the base, sugar and linkage. Individual substance/moiety IDs will be created for each of these elements. The nucleotide sequence will be always entered in the 5’-3’ direction.
Subclass of hl7.model.DomainResource (A resource that includes narrative, extensions, and contained resources.)
- Value Params
- areaOfHybridisation
- The area of hybridisation shall be described if applicable for double stranded RNA or DNA. The number associated with the subunit followed by the number associated to the residue shall be specified in increasing order. The underscore “” shall be used as separator as follows: “Subunitnumber Residue”.
- contained
- These resources do not have an independent existence apart from the resource that contains them - they cannot be identified independently, and nor can they have their own independent transaction scope.
- extension
- May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
- id
- The logical id of the resource, as used in the URL for the resource. Once assigned, this value never changes.
- implicitRules
- A reference to a set of rules that were followed when the resource was constructed, and which must be understood when processing the content. Often, this is a reference to an implementation guide that defines the special rules along with other profiles etc.
- language
- The base language in which the resource is written.
- meta
- The metadata about the resource. This is content that is maintained by the infrastructure. Changes to the content might not always be associated with version changes to the resource.
- modifierExtension
- May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
- numberOfSubunits
- The number of linear sequences of nucleotides linked through phosphodiester bonds shall be described. Subunits would be strands of nucleic acids that are tightly associated typically through Watson-Crick base pairing. NOTE: If not specified in the reference source, the assumption is that there is 1 subunit.
- oligoNucleotideType
- (TBC).
- sequenceType
- The type of the sequence shall be specified based on a controlled vocabulary.
- subunit
- Subunits are listed in order of decreasing length; sequences of the same length will be ordered by molecular weight; subunits that have identical sequences will be repeated multiple times.
- text
- A human-readable narrative that contains a summary of the resource and can be used to represent the content of the resource to a human. The narrative need not encode all the structured data, but is required to contain sufficient detail to make it "clinically safe" for a human to just read the narrative. Resource definitions may define what content should be represented in the narrative to ensure clinical safety.
- Constructor
Introduces the fields sequenceType, numberOfSubunits, areaOfHybridisation, oligoNucleotideType, subunit.
- Companion
- object
Value members
Inherited methods
Slower than nodalMap, but should work with subtypes (e.g. PositiveInt). If you must use it, then:
Slower than nodalMap, but should work with subtypes (e.g. PositiveInt). If you must use it, then:
T
should not be a Choice[_], a LitSeq[_] or an Option[_]- It may require a type parameter sometimes (e.g.
sampleResource >>[BUNDLE_TYPE] { (_: BUNDLE_TYPE) => BUNDLE_TYPE.SEARCHSET }
)
- Inherited from
- FHIRObject
- Inherited from
- FHIRObject
Extract values of type From, and map to LitSeq[To] using fn: From => To. Unlike >>, this is safe even if From is a Choice[], a LitSeq[] or an Option[_] Quite slow, slower than nodalExtract
Extract values of type From, and map to LitSeq[To] using fn: From => To. Unlike >>, this is safe even if From is a Choice[], a LitSeq[] or an Option[_] Quite slow, slower than nodalExtract
- Inherited from
- FHIRObject
- Inherited from
- Utils
- Inherited from
- Utils
- Inherited from
- FHIRObject
- Inherited from
- FHIRObject
Convenience alias for nodalGetByClass andThen map to LitSeq[To] using fn: From => To.
Convenience alias for nodalGetByClass andThen map to LitSeq[To] using fn: From => To.
- Inherited from
- FHIRObject
Extract values of type From Unlike nodalMap, this is safe even if From is a Choice[_], a LitSeq[_] or an Option[_], however there remains a caveat with 'subtyped' types (eg PositiveInt), in that we can't differentiate them from the parent class Quite slow but faster than ^^
Extract values of type From Unlike nodalMap, this is safe even if From is a Choice[_], a LitSeq[_] or an Option[_], however there remains a caveat with 'subtyped' types (eg PositiveInt), in that we can't differentiate them from the parent class Quite slow but faster than ^^
- Inherited from
- FHIRObject
Bit faster than >>
, but still much slower than using update$foo
when possible. If you must use it, then:
Bit faster than >>
, but still much slower than using update$foo
when possible. If you must use it, then:
T
should not be a Choice[_], a LitSeq[_], an Option[_], or any 'subtyped' type (eg PositiveInt). You should ensure, if T is a supertype of multiple valid choice values (e.g. T =:= Object), that the return value of fn retains the same type as the input value.
- Inherited from
- FHIRObject
- Inherited from
- FHIRObject
- Inherited from
- FHIRObject
- Inherited from
- FHIRObject
- Inherited from
- FHIRObject
- Inherited from
- FHIRObject
- Inherited from
- FHIRObject