Trait/Object

dagr.tasks

JarTask

Related Docs: object JarTask | package tasks

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trait JarTask extends AnyRef

Linear Supertypes
AnyRef, Any
Known Subclasses
CallDuplexConsensusReads, CallMolecularConsensusReads, CheckIlluminaDirectory, CleanSam, ClipOverlappingReads, CollectAlignmentSummaryMetrics, CollectBaseDistributionByCycle, CollectDuplexSeqMetrics, CollectGcBiasMetrics, CollectHsMetrics, CollectIlluminaBasecallingMetrics, CollectIlluminaLaneMetrics, CollectInsertSizeMetrics, CollectMultipleMetrics, CollectQualityYieldMetrics, CollectSequencingArtifactMetrics, CollectTargetedPcrMetrics, CollectVariantCallingMetrics, CollectWgsMetrics, DownsampleSam, ErrorRateByReadPosition, EstimateLibraryComplexity, ExtractIlluminaBarcodes, ExtractUmisFromBam, FastqToSam, FgBioTask, FifoBuffer, FilterBam, FilterConsensusReads, FilterSomaticVcf, FilterVcf, FixMateInformation, GatherBamFiles, GatherVcfs, GatkTask, GenerateRegionsFromFasta, GenotypeConcordance, GenotypeGvcfs, GroupReadsByUmi, HaplotypeCaller, IlluminaBasecallsToSam, IndelRealigner, IntervalListToBed, IntervalListTools, JeanLucTask, MarkDuplicates, MarkIlluminaAdapters, MergeBamAlignment, MergeSamFiles, MergeVcfs, Mutect1, Mutect2, PicardTask, RealignerTargetCreator, RemoveSamTags, RevertSam, SamToFastq, SetNmAndUqTags, SortSam, SortVcf, SplitNCigarReads, TrimFastq, TrimPrimers, UpdateVcfSequenceDictionary, ValidateSamFile, Varscan2Somatic
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Inherited
  1. JarTask
  2. AnyRef
  3. Any
Implicitly
  1. by any2stringadd
  2. by StringFormat
  3. by Ensuring
  4. by ArrowAssoc
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Visibility
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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. def +(other: String): String

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    Implicit information
    This member is added by an implicit conversion from JarTask to any2stringadd[JarTask] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd

  4. def ->[B](y: B): (JarTask, B)

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    Implicit information
    This member is added by an implicit conversion from JarTask to ArrowAssoc[JarTask] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()

  5. final def ==(arg0: Any): Boolean

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    AnyRef → Any

  6. final def asInstanceOf[T0]: T0

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    Any

  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. def ensuring(cond: (JarTask) ⇒ Boolean, msg: ⇒ Any): JarTask

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    Implicit information
    This member is added by an implicit conversion from JarTask to Ensuring[JarTask] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  9. def ensuring(cond: (JarTask) ⇒ Boolean): JarTask

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    Implicit information
    This member is added by an implicit conversion from JarTask to Ensuring[JarTask] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  10. def ensuring(cond: Boolean, msg: ⇒ Any): JarTask

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    Implicit information
    This member is added by an implicit conversion from JarTask to Ensuring[JarTask] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  11. def ensuring(cond: Boolean): JarTask

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    Implicit information
    This member is added by an implicit conversion from JarTask to Ensuring[JarTask] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring

  12. final def eq(arg0: AnyRef): Boolean

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    AnyRef

  13. def equals(arg0: Any): Boolean

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    AnyRef → Any

  14. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  15. def formatted(fmtstr: String): String

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    Implicit information
    This member is added by an implicit conversion from JarTask to StringFormat[JarTask] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()

  16. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  17. def hashCode(): Int

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    AnyRef → Any

  18. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  19. def jarArgs(jarPath: Path, jvmArgs: Traversable[String] = Nil, jvmProperties: Map[String, String] = Map.empty, jvmMemory: Memory, useAdvancedGcOptions: Boolean = true): List[String]

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    Attributes
    protected

  20. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  21. final def notify(): Unit

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    Definition Classes
    AnyRef

  22. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  23. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  24. def toString(): String

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    Definition Classes
    AnyRef → Any

  25. final def wait(): Unit

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    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long, arg1: Int): Unit

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    AnyRef
    Annotations
    @throws( ... )

  27. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  28. def →[B](y: B): (JarTask, B)

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    Implicit information
    This member is added by an implicit conversion from JarTask to ArrowAssoc[JarTask] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion any2stringadd from JarTask to any2stringadd[JarTask]

Inherited by implicit conversion StringFormat from JarTask to StringFormat[JarTask]

Inherited by implicit conversion Ensuring from JarTask to Ensuring[JarTask]

Inherited by implicit conversion ArrowAssoc from JarTask to ArrowAssoc[JarTask]

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