Inherited from Configuration
Inherited from ConfigurationLike
Inherited from FixedResources
Inherited from ScheduleWithEmptyDefaultResources
Inherited from ProcessTask
Inherited from UnitTask
Inherited from Schedulable
Inherited from LazyLogging
Inherited from Task
Inherited from Dependable
Runs the GATK walker that splits reads at N operators in cigars so that RNA-seq BAMs can be fed into the HaplotypeCaller