Paired
AssignmentStrategy
Partitioner
ScatterGather
PathPrefix
DagrDef
PathToBam
DagrDef
PathToFasta
DagrDef
PathToFastq
DagrDef
PathToIntervals
DagrDef
PathToVcf
DagrDef
Pdf
PicardOutput
PerTargetExtension
CollectHsMetrics
PicardJarConfigPath
PicardTask
PicardMetricsTask
picard
PicardOutput
picard
PicardTask
picard
pValue
Varscan2Somatic
padding
IntervalListTools
pairedEnd
BwaBacktrack
pairedReadsOnly
FilterSomaticVcf
partitions
Partitioner
SplitIntervalsForCallingRegions
pathPrefix
PicardMetricsTask
paths
DeleteFiles
perTargetMetricsPath
CollectTargetedPcrMetrics
pfReadsOnly
CollectBaseDistributionByCycle
picard
tasks
pickResources
BwaAln
BwaMem
CollectVariantCallingMetrics
ExtractIlluminaBarcodes
IlluminaBasecallsToSam
FreeBayesParallel
precise
VerifyBamId
prefix
CollectAlignmentSummaryMetrics
CollectBaseDistributionByCycle
CollectGcBiasMetrics
CollectHsMetrics
CollectIlluminaBasecallingMetrics
CollectInsertSizeMetrics
CollectMultipleMetrics
CollectQualityYieldMetrics
CollectSequencingArtifactMetrics
CollectTargetedPcrMetrics
CollectWgsMetrics
EstimateLibraryComplexity
ExtractIlluminaBarcodes
GenotypeConcordance
MarkDuplicates
MarkIlluminaAdapters
PicardMetricsTask
ValidateSamFile
primers
TrimPrimers
proportion
CalculateDownsamplingProportion
DownsampleSam