fastq

Type Members

1. case class FastqRecord(name: String, bases: String, quals: String, comment: Option[String], readNumber: Option[Int]) extends Product with Serializable

   

   Represents a record that can be read from or written to a fastq file.

2. class FastqSource extends Iterator[FastqRecord] with Closeable

   

   Reads fastq records from any text based source via a reader.

   Reads fastq records from any text based source via a reader. Ensures that lines come in the expected groupings of four lines with the correct headers, and that bases and qualities are of the same length. The underlying reader is closed automatically when EOF is reached.

3. class FastqWriter extends Closeable

   

   Implements a writer for fastq records.

4. class TrimFastq extends FgBioTool with LazyLogging

   

   Annotations

   @ClpAnnotation()