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–
deprecated
com
com.fulcrumgenomics
(object)
FgBioDef
com.fulcrumgenomics.bam
(class)
FilterBam
(class)
FindTechnicalReads
(class)
RandomizeBam
(class)
SetMateInformation
(class)
UpdateReadGroups
com.fulcrumgenomics.cmdline
(object)
ClpGroups
(object)
(class)
FgBioMain
(trait)
FgBioTool
com.fulcrumgenomics.fasta
(class)
HardMaskFasta
(object)
(class)
ReferenceSequenceIterator
com.fulcrumgenomics.fastq
(case class)
FastqRecord
(object)
(class)
FastqSource
(object)
(class)
FastqWriter
(class)
TrimFastq
com.fulcrumgenomics.personal
com.fulcrumgenomics.personal.nhomer
(class)
GenerateRegionsFromFasta
(class)
HasSequence
(class)
SplitTag
com.fulcrumgenomics.umi
(class)
AnnotateBamWithUmis
(class)
CallMolecularConsensusReads
(class)
ConsensusCaller
(object)
(case class)
ConsensusCallerOptions
(case class)
ConsensusRead
(object)
(class)
ExtractUmisFromBam
(object)
(class)
GroupReadsByUmi
(case class)
SourceRead
com.fulcrumgenomics.util
(class)
DnaFoldPrediction
(class)
DnaFoldPredictor
(object)
IlluminaAdapters
(object)
(class)
Io
(object)
MathUtil
(case class)
MolecularBarcode
(object)
NumericTypes
(class)
PickIlluminaIndices
(class)
ProgressLogger
(object)
(trait)
ReadSegment
(object)
(class)
ReadStructure
(case class)
SampleBarcode
(object)
Sequences
(object)
(class)
SimpleCounter
(case class)
Skip
(case class)
Template
com.fulcrumgenomics.vcf
(object)
HapCutReader
(class)
HapCutToVcf
(object)
HapCutVcfHeaderLines