MakeTwoSampleMixtureVcf
vcf
MathUtil
util
MaxLikelihoodChangeFormatDescription
HapCut1VcfHeaderLines
MaxLikelihoodChangeFormatHeaderLine
HapCut1VcfHeaderLines
MaxLikelihoodChangeFormatTag
HapCut1VcfHeaderLines
MaxValue
PhredScore
MecReductionFormatDescription
HapCut1VcfHeaderLines
MecReductionFormatHeaderLine
HapCut1VcfHeaderLines
MecReductionFormatTag
HapCut1VcfHeaderLines
Metric
util
MetricExtension
AssessPhasingMetric
PhaseBlockLengthMetric
MinValue
PhredScore
Minus
SamRecordSetBuilder
MolecularBarcode
util
MoleculeId
GroupReadsByUmi
MultiAllelicFilter
MakeTwoSampleMixtureVcf
main
FgBioMain
makeItSo
FgBioMain
makeItSoAndExit
FgBioMain
makeMap
NumericCounter
SimpleCounter
makeSample
SampleSheet
makeWriter
MakeTwoSampleMixtureVcf
matchLength
FindTechnicalReads
maxBaseQuality
CallMolecularConsensusReads
maxErrors
FindTechnicalReads
maxGc
PickIlluminaIndices
PickLongIndices
maxHomopolymer
PickIlluminaIndices
PickLongIndices
maxMismatches
HasSequence
maxRawBaseQuality
VanillaUmiConsensusCallerOptions
maxWithIndex
MathUtil
mean
MathUtil
NumericCounter
meanQuality
ConsensusRead
mean_called_block_length
AssessPhasingMetric
mean_truth_block_length
AssessPhasingMetric
median
NumericCounter
median_called_block_length
AssessPhasingMetric
median_truth_block_length
AssessPhasingMetric
message
FailureException
metrics
HasSequence
minBaseQuality
ErrorRateByReadPosition
minConsensusBaseQuality
CallMolecularConsensusReads
VanillaUmiConsensusCallerOptions
minDeltaG
PickIlluminaIndices
PickLongIndices
minGc
PickIlluminaIndices
PickLongIndices
minInputBaseQuality
CallMolecularConsensusReads
VanillaUmiConsensusCallerOptions
minMapQ
FilterBam
GroupReadsByUmi
minMappingQuality
ErrorRateByReadPosition
minMeanConsensusBaseQuality
CallMolecularConsensusReads
VanillaUmiConsensusCallerOptions
minReads
CallMolecularConsensusReads
VanillaUmiConsensusCallerOptions
minWithIndex
MathUtil
min_mismatches
IndexMetric
minimumBaseQuality
HasSequence
miseq
util
mode
NumericCounter
modifyBlocks
AssessPhasing
molecularBarcode
ReadStructure
molecularBarcodeTags
ExtractUmisFromBam
molecularIndexTags
ExtractUmisFromBam