Object

com.fulcrumgenomics.bam.api.SamOrder

Unknown

Related Doc: package SamOrder

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object Unknown extends SamOrder with Product with Serializable

Ordering for the official "unknown" ordering.

Linear Supertypes
Serializable, Serializable, SamOrder, Product, Equals, AnyRef, Any
Ordering
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Inherited
  1. Unknown
  2. Serializable
  3. Serializable
  4. SamOrder
  5. Product
  6. Equals
  7. AnyRef
  8. Any
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Visibility
  1. Public
  2. All

Type Members

  1. type A = Nothing

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    Definition Classes
    Unknown → SamOrder

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. def applyTo(header: SAMFileHeader): SAMFileHeader

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    Sets the appropriate fields in the SAM header for the order.

    Sets the appropriate fields in the SAM header for the order.

    Definition Classes
    SamOrder

  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  8. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  9. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  11. val groupOrder: GroupOrder

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    Returns the group order that should be set in the SAM header.

    Returns the group order that should be set in the SAM header. None will cause GO to be unset.

    Definition Classes
    Unknown → SamOrder

  12. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  13. def name: String

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    Returns the order's name.

    Returns the order's name.

    Definition Classes
    SamOrder

  14. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  15. final def notify(): Unit

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    Definition Classes
    AnyRef

  16. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  17. val sortOrder: SortOrder

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    Returns the sort order that should be set in the SAM header.

    Returns the sort order that should be set in the SAM header.

    Definition Classes
    Unknown → SamOrder

  18. def sortkey: (SamRecord) ⇒ A

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    Function to generate the sort key for sorting records into this ordering.

    Function to generate the sort key for sorting records into this ordering.

    Definition Classes
    Unknown → SamOrder

  19. val subSort: Option[String]

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    The subsort string to be placed *after* the sort order in the SS tag.

    The subsort string to be placed *after* the sort order in the SS tag.

    Definition Classes
    Unknown → SamOrder

  20. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  21. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  23. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from SamOrder

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped