SamOrder

abstract def canEqual(that: Any): Boolean

abstract def groupOrder: GroupOrder

Returns the group order that should be set in the SAM header.

abstract def productArity: Int

abstract def productElement(n: Int): Any

abstract def sortOrder: SortOrder

Returns the sort order that should be set in the SAM header.

abstract def sortkey: (SamRecord) ⇒ A

Function to generate the sort key for sorting records into this ordering.

abstract def subSort: Option[String]

The subsort string to be placed *after* the sort order in the SS tag.

final def !=(arg0: Any): Boolean

final def ##(): Int

def +(other: String): String

def ->[B](y: B): (SamOrder, B)

final def ==(arg0: Any): Boolean

def applyTo(header: SAMFileHeader): SAMFileHeader

Sets the appropriate fields in the SAM header for the order.

final def asInstanceOf[T0]: T0

def clone(): AnyRef

def ensuring(cond: (SamOrder) ⇒ Boolean, msg: ⇒ Any): SamOrder

def ensuring(cond: (SamOrder) ⇒ Boolean): SamOrder

def ensuring(cond: Boolean, msg: ⇒ Any): SamOrder

def ensuring(cond: Boolean): SamOrder

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

def finalize(): Unit

def formatted(fmtstr: String): String

final def getClass(): Class[_]

def hashCode(): Int

final def isInstanceOf[T0]: Boolean

def name: String

Returns the order's name.

final def ne(arg0: AnyRef): Boolean

final def notify(): Unit

final def notifyAll(): Unit

def productIterator: Iterator[Any]

def productPrefix: String

final def synchronized[T0](arg0: ⇒ T0): T0

def toString(): String

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit

def →[B](y: B): (SamOrder, B)