Packages

case class RunInfo(run_barcode: String, flowcell_barcode: String, instrument_name: String, run_date: Iso8601Date, read_structure: ReadStructure, num_lanes: Int) extends Metric with Product with Serializable

Stores the result of parsing the run info (RunInfo.xml) file from an Illumina run folder.

run_barcode

the unique identifier for the sequencing run and flowcell, stored as "<instrument-name>_<flowcell-barcode>".

flowcell_barcode

the flowcell barcode.

instrument_name

the instrument name.

run_date

the date of the sequencing run.

read_structure

the description of the logical structure of cycles within the sequencing run. This will only contain template and sample barcode segments, as the RunInfo.xml does not contain information about other segments (i.e. molecular barcodes and skips).

num_lanes

the number of lanes in the flowcell.

Linear Supertypes
Serializable, Serializable, Metric, Product, Equals, AnyRef, Any
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Inherited
  1. RunInfo
  2. Serializable
  3. Serializable
  4. Metric
  5. Product
  6. Equals
  7. AnyRef
  8. Any
Implicitly
  1. by any2stringadd
  2. by StringFormat
  3. by Ensuring
  4. by ArrowAssoc
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Visibility
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Instance Constructors

  1. new RunInfo(run_barcode: String, flowcell_barcode: String, instrument_name: String, run_date: Iso8601Date, read_structure: ReadStructure, num_lanes: Int)

    run_barcode

    the unique identifier for the sequencing run and flowcell, stored as "<instrument-name>_<flowcell-barcode>".

    flowcell_barcode

    the flowcell barcode.

    instrument_name

    the instrument name.

    run_date

    the date of the sequencing run.

    read_structure

    the description of the logical structure of cycles within the sequencing run. This will only contain template and sample barcode segments, as the RunInfo.xml does not contain information about other segments (i.e. molecular barcodes and skips).

    num_lanes

    the number of lanes in the flowcell.

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from RunInfo to any2stringadd[RunInfo] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ->[B](y: B): (RunInfo, B)
    Implicit
    This member is added by an implicit conversion from RunInfo to ArrowAssoc[RunInfo] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()
  5. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  6. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  7. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. def ensuring(cond: (RunInfo) ⇒ Boolean, msg: ⇒ Any): RunInfo
    Implicit
    This member is added by an implicit conversion from RunInfo to Ensuring[RunInfo] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  9. def ensuring(cond: (RunInfo) ⇒ Boolean): RunInfo
    Implicit
    This member is added by an implicit conversion from RunInfo to Ensuring[RunInfo] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  10. def ensuring(cond: Boolean, msg: ⇒ Any): RunInfo
    Implicit
    This member is added by an implicit conversion from RunInfo to Ensuring[RunInfo] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  11. def ensuring(cond: Boolean): RunInfo
    Implicit
    This member is added by an implicit conversion from RunInfo to Ensuring[RunInfo] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  12. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  13. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  14. val flowcell_barcode: String
  15. def formatValues(value: Any): String

    Override this method to customize how values are formatted.

    Override this method to customize how values are formatted.

    Attributes
    protected
    Definition Classes
    Metric
  16. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from RunInfo to StringFormat[RunInfo] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()
  17. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
  18. val instrument_name: String
  19. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  20. def names: Seq[String]

    Get the names of the arguments in the order they were defined.

    Get the names of the arguments in the order they were defined.

    Definition Classes
    Metric
  21. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  22. final def notify(): Unit
    Definition Classes
    AnyRef
  23. final def notifyAll(): Unit
    Definition Classes
    AnyRef
  24. val num_lanes: Int
  25. val read_structure: ReadStructure
  26. val run_barcode: String
  27. val run_date: Iso8601Date
  28. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  29. def toString(): String
    Definition Classes
    Metric → AnyRef → Any
  30. def values: Seq[String]

    Get the values of the arguments in the order they were defined.

    Get the values of the arguments in the order they were defined.

    Definition Classes
    Metric
  31. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  32. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  33. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  34. def →[B](y: B): (RunInfo, B)
    Implicit
    This member is added by an implicit conversion from RunInfo to ArrowAssoc[RunInfo] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Inherited from Serializable

Inherited from Serializable

Inherited from Metric

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion any2stringadd from RunInfo to any2stringadd[RunInfo]

Inherited by implicit conversion StringFormat from RunInfo to StringFormat[RunInfo]

Inherited by implicit conversion Ensuring from RunInfo to Ensuring[RunInfo]

Inherited by implicit conversion ArrowAssoc from RunInfo to ArrowAssoc[RunInfo]

Ungrouped