case class Cigar(elems: IndexedSeq[CigarElem]) extends Iterable[CigarElem] with Product with Serializable

Object representation of a Cigar string representing an alignment between two sequences.

elems

the ordered sequence of elements in the Cigar

Linear Supertypes
Serializable, Serializable, Product, Iterable[CigarElem], IterableLike[CigarElem, Iterable[CigarElem]], Equals, GenIterable[CigarElem], GenIterableLike[CigarElem, Iterable[CigarElem]], Traversable[CigarElem], GenTraversable[CigarElem], GenericTraversableTemplate[CigarElem, Iterable], TraversableLike[CigarElem, Iterable[CigarElem]], GenTraversableLike[CigarElem, Iterable[CigarElem]], Parallelizable[CigarElem, ParIterable[CigarElem]], TraversableOnce[CigarElem], GenTraversableOnce[CigarElem], FilterMonadic[CigarElem, Iterable[CigarElem]], HasNewBuilder[CigarElem, Iterable[com.fulcrumgenomics.alignment.CigarElem] @scala.annotation.unchecked.uncheckedVariance], AnyRef, Any
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Inherited
  1. Cigar
  2. Serializable
  3. Serializable
  4. Product
  5. Iterable
  6. IterableLike
  7. Equals
  8. GenIterable
  9. GenIterableLike
  10. Traversable
  11. GenTraversable
  12. GenericTraversableTemplate
  13. TraversableLike
  14. GenTraversableLike
  15. Parallelizable
  16. TraversableOnce
  17. GenTraversableOnce
  18. FilterMonadic
  19. HasNewBuilder
  20. AnyRef
  21. Any
Implicitly
  1. by MonadOps
  2. by CollectionsHaveToParArray
  3. by any2stringadd
  4. by StringFormat
  5. by Ensuring
  6. by ArrowAssoc
  7. by alternateImplicit
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Cigar(elems: IndexedSeq[CigarElem])

    elems

    the ordered sequence of elements in the Cigar

Type Members

  1. type Self = Iterable[CigarElem]
    Attributes
    protected[this]
    Definition Classes
    TraversableLike
  2. class WithFilter extends FilterMonadic[A, Repr]
    Definition Classes
    TraversableLike

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from Cigar to any2stringadd[Cigar] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ++[B >: CigarElem, That](that: GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[CigarElem], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  5. def ++:[B >: CigarElem, That](that: Traversable[B])(implicit bf: CanBuildFrom[Iterable[CigarElem], B, That]): That
    Definition Classes
    TraversableLike
  6. def ++:[B >: CigarElem, That](that: TraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[CigarElem], B, That]): That
    Definition Classes
    TraversableLike
  7. def ->[B](y: B): (Cigar, B)
    Implicit
    This member is added by an implicit conversion from Cigar to ArrowAssoc[Cigar] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()
  8. def /:[B](z: B)(op: (B, CigarElem) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  9. def :\[B](z: B)(op: (CigarElem, B) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  10. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  11. def addString(b: StringBuilder): StringBuilder
    Definition Classes
    TraversableOnce
  12. def addString(b: StringBuilder, sep: String): StringBuilder
    Definition Classes
    TraversableOnce
  13. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder
    Definition Classes
    TraversableOnce
  14. def aggregate[B](z: ⇒ B)(seqop: (B, CigarElem) ⇒ B, combop: (B, B) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  15. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  16. def canEqual(that: Any): Boolean
    Definition Classes
    IterableLike → Equals
  17. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  18. def coalesce: Cigar

    Coalesces adjacent operators of the same type into single operators.

  19. def collect[B, That](pf: PartialFunction[CigarElem, B])(implicit bf: CanBuildFrom[Iterable[CigarElem], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  20. def collectFirst[B](pf: PartialFunction[CigarElem, B]): Option[B]
    Definition Classes
    TraversableOnce
  21. def companion: GenericCompanion[Iterable]
    Definition Classes
    Iterable → GenIterable → Traversable → GenTraversable → GenericTraversableTemplate
  22. def copyToArray[B >: CigarElem](xs: Array[B], start: Int, len: Int): Unit
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  23. def copyToArray[B >: CigarElem](xs: Array[B]): Unit
    Definition Classes
    TraversableOnce → GenTraversableOnce
  24. def copyToArray[B >: CigarElem](xs: Array[B], start: Int): Unit
    Definition Classes
    TraversableOnce → GenTraversableOnce
  25. def copyToBuffer[B >: CigarElem](dest: Buffer[B]): Unit
    Definition Classes
    TraversableOnce
  26. def count(p: (CigarElem) ⇒ Boolean): Int
    Definition Classes
    TraversableOnce → GenTraversableOnce
  27. def drop(n: Int): Iterable[CigarElem]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  28. def dropRight(n: Int): Iterable[CigarElem]
    Definition Classes
    IterableLike
  29. def dropWhile(p: (CigarElem) ⇒ Boolean): Iterable[CigarElem]
    Definition Classes
    TraversableLike → GenTraversableLike
  30. val elems: IndexedSeq[CigarElem]
  31. def ensuring(cond: (Cigar) ⇒ Boolean, msg: ⇒ Any): Cigar
    Implicit
    This member is added by an implicit conversion from Cigar to Ensuring[Cigar] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  32. def ensuring(cond: (Cigar) ⇒ Boolean): Cigar
    Implicit
    This member is added by an implicit conversion from Cigar to Ensuring[Cigar] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  33. def ensuring(cond: Boolean, msg: ⇒ Any): Cigar
    Implicit
    This member is added by an implicit conversion from Cigar to Ensuring[Cigar] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  34. def ensuring(cond: Boolean): Cigar
    Implicit
    This member is added by an implicit conversion from Cigar to Ensuring[Cigar] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  35. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  36. def exists(p: (CigarElem) ⇒ Boolean): Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  37. def filter(p: (CigarElem) ⇒ Boolean): Iterable[CigarElem]
    Definition Classes
    TraversableLike → GenTraversableLike
  38. def filterNot(p: (CigarElem) ⇒ Boolean): Iterable[CigarElem]
    Definition Classes
    TraversableLike → GenTraversableLike
  39. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  40. def find(p: (CigarElem) ⇒ Boolean): Option[CigarElem]
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  41. def flatMap[B, That](f: (CigarElem) ⇒ GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[CigarElem], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  42. def flatten[B](implicit asTraversable: (CigarElem) ⇒ GenTraversableOnce[B]): Iterable[B]
    Definition Classes
    GenericTraversableTemplate
  43. def fold[A1 >: CigarElem](z: A1)(op: (A1, A1) ⇒ A1): A1
    Definition Classes
    TraversableOnce → GenTraversableOnce
  44. def foldLeft[B](z: B)(op: (B, CigarElem) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  45. def foldRight[B](z: B)(op: (CigarElem, B) ⇒ B): B
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  46. def forall(p: (CigarElem) ⇒ Boolean): Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  47. def foreach[U](f: (CigarElem) ⇒ U): Unit
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike → TraversableOnce → GenTraversableOnce → FilterMonadic
  48. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from Cigar to StringFormat[Cigar] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()
  49. def genericBuilder[B]: Builder[B, Iterable[B]]
    Definition Classes
    GenericTraversableTemplate
  50. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
  51. def groupBy[K](f: (CigarElem) ⇒ K): Map[K, Iterable[CigarElem]]
    Definition Classes
    TraversableLike → GenTraversableLike
  52. def grouped(size: Int): Iterator[Iterable[CigarElem]]
    Definition Classes
    IterableLike
  53. def hasDefiniteSize: Boolean
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  54. def head: CigarElem
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  55. def headOption: Option[CigarElem]
    Definition Classes
    TraversableLike → GenTraversableLike
  56. def init: Iterable[CigarElem]
    Definition Classes
    TraversableLike → GenTraversableLike
  57. def inits: Iterator[Iterable[CigarElem]]
    Definition Classes
    TraversableLike
  58. def isEmpty: Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  59. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  60. def isPrefixOf(that: Cigar): Boolean

    Returns true if this Cigar is a prefix of the other cigar.

    Returns true if this Cigar is a prefix of the other cigar. Prefix is defined as having the same operators for the same bases through the length of the cigar. E.g.: 10M is a prefix of 10M2S 10M is a prefix of 10M 10M is a prefix of 20M 10M is not a prefix of 2S10M

  61. final def isTraversableAgain: Boolean
    Definition Classes
    TraversableLike → GenTraversableLike → GenTraversableOnce
  62. def iterator: Iterator[CigarElem]

    Provides an iterator over the elements in the cigar.

    Provides an iterator over the elements in the cigar.

    Definition Classes
    Cigar → IterableLike → GenIterableLike
  63. def last: CigarElem
    Definition Classes
    TraversableLike → GenTraversableLike
  64. def lastOption: Option[CigarElem]
    Definition Classes
    TraversableLike → GenTraversableLike
  65. def lengthOnQuery: Int

    Returns the length of the alignment on the query sequence.

  66. def lengthOnTarget: Int

    Returns the length of the alignment on the query sequence.

  67. def map[B, That](f: (CigarElem) ⇒ B)(implicit bf: CanBuildFrom[Iterable[CigarElem], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  68. def max[B >: CigarElem](implicit cmp: Ordering[B]): CigarElem
    Definition Classes
    TraversableOnce → GenTraversableOnce
  69. def maxBy[B](f: (CigarElem) ⇒ B)(implicit cmp: Ordering[B]): CigarElem
    Definition Classes
    TraversableOnce → GenTraversableOnce
  70. def min[B >: CigarElem](implicit cmp: Ordering[B]): CigarElem
    Definition Classes
    TraversableOnce → GenTraversableOnce
  71. def minBy[B](f: (CigarElem) ⇒ B)(implicit cmp: Ordering[B]): CigarElem
    Definition Classes
    TraversableOnce → GenTraversableOnce
  72. def mkString: String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  73. def mkString(sep: String): String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  74. def mkString(start: String, sep: String, end: String): String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  75. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  76. def newBuilder: Builder[CigarElem, Iterable[CigarElem]]
    Attributes
    protected[this]
    Definition Classes
    GenericTraversableTemplate → HasNewBuilder
  77. def nonEmpty: Boolean
    Definition Classes
    TraversableOnce → GenTraversableOnce
  78. final def notify(): Unit
    Definition Classes
    AnyRef
  79. final def notifyAll(): Unit
    Definition Classes
    AnyRef
  80. def par: ParIterable[CigarElem]
    Definition Classes
    Parallelizable
  81. def parCombiner: Combiner[CigarElem, ParIterable[CigarElem]]
    Attributes
    protected[this]
    Definition Classes
    TraversableLike → Parallelizable
  82. def partition(p: (CigarElem) ⇒ Boolean): (Iterable[CigarElem], Iterable[CigarElem])
    Definition Classes
    TraversableLike → GenTraversableLike
  83. def product[B >: CigarElem](implicit num: Numeric[B]): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  84. def reduce[A1 >: CigarElem](op: (A1, A1) ⇒ A1): A1
    Definition Classes
    TraversableOnce → GenTraversableOnce
  85. def reduceLeft[B >: CigarElem](op: (B, CigarElem) ⇒ B): B
    Definition Classes
    TraversableOnce
  86. def reduceLeftOption[B >: CigarElem](op: (B, CigarElem) ⇒ B): Option[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  87. def reduceOption[A1 >: CigarElem](op: (A1, A1) ⇒ A1): Option[A1]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  88. def reduceRight[B >: CigarElem](op: (CigarElem, B) ⇒ B): B
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  89. def reduceRightOption[B >: CigarElem](op: (CigarElem, B) ⇒ B): Option[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  90. def repr: Iterable[CigarElem]
    Definition Classes
    TraversableLike → GenTraversableLike
  91. def reverse: Cigar

    Returns a new Cigar that contains the same elements in the reverse order of this cigar.

  92. def reverseIterator: Iterator[CigarElem]

    Provides an iterator over the elements in the reverse order.

  93. def reversed: List[CigarElem]
    Attributes
    protected[this]
    Definition Classes
    TraversableOnce
  94. def sameElements[B >: CigarElem](that: GenIterable[B]): Boolean
    Definition Classes
    IterableLike → GenIterableLike
  95. def scan[B >: CigarElem, That](z: B)(op: (B, B) ⇒ B)(implicit cbf: CanBuildFrom[Iterable[CigarElem], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  96. def scanLeft[B, That](z: B)(op: (B, CigarElem) ⇒ B)(implicit bf: CanBuildFrom[Iterable[CigarElem], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  97. def scanRight[B, That](z: B)(op: (CigarElem, B) ⇒ B)(implicit bf: CanBuildFrom[Iterable[CigarElem], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) The behavior of scanRight has changed. The previous behavior can be reproduced with scanRight.reverse.

  98. def seq: Iterable[CigarElem]
    Definition Classes
    Iterable → GenIterable → Traversable → GenTraversable → Parallelizable → TraversableOnce → GenTraversableOnce
  99. def size: Int
    Definition Classes
    TraversableOnce → GenTraversableOnce
  100. def sizeHintIfCheap: Int
    Attributes
    protected[scala.collection]
    Definition Classes
    GenTraversableOnce
  101. def slice(from: Int, until: Int): Iterable[CigarElem]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  102. def sliding(size: Int, step: Int): Iterator[Iterable[CigarElem]]
    Definition Classes
    IterableLike
  103. def sliding(size: Int): Iterator[Iterable[CigarElem]]
    Definition Classes
    IterableLike
  104. def span(p: (CigarElem) ⇒ Boolean): (Iterable[CigarElem], Iterable[CigarElem])
    Definition Classes
    TraversableLike → GenTraversableLike
  105. def splitAt(n: Int): (Iterable[CigarElem], Iterable[CigarElem])
    Definition Classes
    TraversableLike → GenTraversableLike
  106. def stringPrefix: String
    Definition Classes
    TraversableLike → GenTraversableLike
  107. def sum[B >: CigarElem](implicit num: Numeric[B]): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  108. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  109. def tail: Iterable[CigarElem]
    Definition Classes
    TraversableLike → GenTraversableLike
  110. def tails: Iterator[Iterable[CigarElem]]
    Definition Classes
    TraversableLike
  111. def take(n: Int): Iterable[CigarElem]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  112. def takeRight(n: Int): Iterable[CigarElem]
    Definition Classes
    IterableLike
  113. def takeWhile(p: (CigarElem) ⇒ Boolean): Iterable[CigarElem]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  114. def thisCollection: Iterable[CigarElem]
    Attributes
    protected[this]
    Definition Classes
    IterableLike → TraversableLike
  115. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, CigarElem, Col[CigarElem]]): Col[CigarElem]
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  116. def toArray[B >: CigarElem](implicit arg0: ClassTag[B]): Array[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  117. def toBuffer[B >: CigarElem]: Buffer[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  118. def toCollection(repr: Iterable[CigarElem]): Iterable[CigarElem]
    Attributes
    protected[this]
    Definition Classes
    IterableLike → TraversableLike
  119. def toHtsjdkCigar: htsjdk.samtools.Cigar

    Converts the Cigar into an HTSJDK Cigar object.

  120. def toIndexedSeq: IndexedSeq[CigarElem]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  121. def toIterable: Iterable[CigarElem]
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  122. def toIterator: Iterator[CigarElem]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  123. def toList: List[CigarElem]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  124. def toMap[T, U](implicit ev: <:<[CigarElem, (T, U)]): Map[T, U]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  125. def toParArray: ParArray[T]
    Implicit
    This member is added by an implicit conversion from Cigar to CollectionsHaveToParArray[Cigar, T] performed by method CollectionsHaveToParArray in scala.collection.parallel. This conversion will take place only if an implicit value of type (Cigar) ⇒ GenTraversableOnce[T] is in scope.
    Definition Classes
    CollectionsHaveToParArray
  126. def toSeq: Seq[CigarElem]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  127. def toSet[B >: CigarElem]: Set[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  128. def toStream: Stream[CigarElem]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
  129. def toString(): String

    Returns the canonical Cigar string.

    Returns the canonical Cigar string.

    Definition Classes
    Cigar → TraversableLike → AnyRef → Any
  130. def toTraversable: Traversable[CigarElem]
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  131. def toVector: Vector[CigarElem]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  132. def transpose[B](implicit asTraversable: (CigarElem) ⇒ GenTraversableOnce[B]): Iterable[Iterable[B]]
    Definition Classes
    GenericTraversableTemplate
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) transpose throws an IllegalArgumentException if collections are not uniformly sized.

  133. def truncateToQueryLength(len: Int): Cigar

    Yields a new cigar that is truncated to the given ength on the query.

  134. def truncateToTargetLength(len: Int): Cigar

    Yields a new cigar that is truncated to the given length on the target.

  135. def unzip[A1, A2](implicit asPair: (CigarElem) ⇒ (A1, A2)): (Iterable[A1], Iterable[A2])
    Definition Classes
    GenericTraversableTemplate
  136. def unzip3[A1, A2, A3](implicit asTriple: (CigarElem) ⇒ (A1, A2, A3)): (Iterable[A1], Iterable[A2], Iterable[A3])
    Definition Classes
    GenericTraversableTemplate
  137. def view(from: Int, until: Int): IterableView[CigarElem, Iterable[CigarElem]]
    Definition Classes
    IterableLike → TraversableLike
  138. def view: IterableView[CigarElem, Iterable[CigarElem]]
    Definition Classes
    IterableLike → TraversableLike
  139. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  140. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  141. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  142. def withFilter(p: (CigarElem) ⇒ Boolean): FilterMonadic[CigarElem, Iterable[CigarElem]]
    Definition Classes
    TraversableLike → FilterMonadic
  143. def zip[A1 >: CigarElem, B, That](that: GenIterable[B])(implicit bf: CanBuildFrom[Iterable[CigarElem], (A1, B), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  144. def zipAll[B, A1 >: CigarElem, That](that: GenIterable[B], thisElem: A1, thatElem: B)(implicit bf: CanBuildFrom[Iterable[CigarElem], (A1, B), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  145. def zipWithIndex[A1 >: CigarElem, That](implicit bf: CanBuildFrom[Iterable[CigarElem], (A1, Int), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  146. def →[B](y: B): (Cigar, B)
    Implicit
    This member is added by an implicit conversion from Cigar to ArrowAssoc[Cigar] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Shadowed Implicit Value Members

  1. def filter(p: (CigarElem) ⇒ Boolean): TraversableOnce[CigarElem]
    Implicit
    This member is added by an implicit conversion from Cigar to MonadOps[CigarElem] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (cigar: MonadOps[CigarElem]).filter(p)
    Definition Classes
    MonadOps
  2. def flatMap[B](f: (CigarElem) ⇒ GenTraversableOnce[B]): TraversableOnce[B]
    Implicit
    This member is added by an implicit conversion from Cigar to MonadOps[CigarElem] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (cigar: MonadOps[CigarElem]).flatMap(f)
    Definition Classes
    MonadOps
  3. def map[B](f: (CigarElem) ⇒ B): TraversableOnce[B]
    Implicit
    This member is added by an implicit conversion from Cigar to MonadOps[CigarElem] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (cigar: MonadOps[CigarElem]).map(f)
    Definition Classes
    MonadOps
  4. def withFilter(p: (CigarElem) ⇒ Boolean): Iterator[CigarElem]
    Implicit
    This member is added by an implicit conversion from Cigar to MonadOps[CigarElem] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (cigar: MonadOps[CigarElem]).withFilter(p)
    Definition Classes
    MonadOps

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Iterable[CigarElem]

Inherited from IterableLike[CigarElem, Iterable[CigarElem]]

Inherited from Equals

Inherited from GenIterable[CigarElem]

Inherited from GenIterableLike[CigarElem, Iterable[CigarElem]]

Inherited from Traversable[CigarElem]

Inherited from GenTraversable[CigarElem]

Inherited from GenericTraversableTemplate[CigarElem, Iterable]

Inherited from TraversableLike[CigarElem, Iterable[CigarElem]]

Inherited from GenTraversableLike[CigarElem, Iterable[CigarElem]]

Inherited from Parallelizable[CigarElem, ParIterable[CigarElem]]

Inherited from TraversableOnce[CigarElem]

Inherited from GenTraversableOnce[CigarElem]

Inherited from FilterMonadic[CigarElem, Iterable[CigarElem]]

Inherited from HasNewBuilder[CigarElem, Iterable[com.fulcrumgenomics.alignment.CigarElem] @scala.annotation.unchecked.uncheckedVariance]

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion MonadOps from Cigar to MonadOps[CigarElem]

Inherited by implicit conversion CollectionsHaveToParArray from Cigar to CollectionsHaveToParArray[Cigar, T]

Inherited by implicit conversion any2stringadd from Cigar to any2stringadd[Cigar]

Inherited by implicit conversion StringFormat from Cigar to StringFormat[Cigar]

Inherited by implicit conversion Ensuring from Cigar to Ensuring[Cigar]

Inherited by implicit conversion ArrowAssoc from Cigar to ArrowAssoc[Cigar]

Inherited by implicit conversion alternateImplicit from Cigar to ForceImplicitAmbiguity

Ungrouped