Packages

object Factory extends SAMRecordFactory

Singleton implementation of SAMRecordFactory to return instances of htsjdk.samtools.SAMRecord and htsjdk.samtools.BAMRecord that have been enhanced by mixing in SamRecord.

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SAMRecordFactory, AnyRef, Any
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Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  6. def createBAMRecord(header: SAMFileHeader, refIndex: Int, alignmentStart: Int, readNameLength: Short, mapq: Short, indexingBin: Int, cigarLen: Int, flags: Int, readLen: Int, mateRefIndex: Int, mateAlignmentStart: Int, insertSize: Int, variableLengthBlock: Array[Byte]): BAMRecord

    Factory implementation method to create BAMRecords.

    Factory implementation method to create BAMRecords.

    Definition Classes
    Factory → SAMRecordFactory
  7. def createSAMRecord(header: SAMFileHeader): SAMRecord

    Factory implementation method to create SAMRecords.

    Factory implementation method to create SAMRecords.

    Definition Classes
    Factory → SAMRecordFactory
  8. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  9. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  10. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  11. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
  12. def hashCode(): Int
    Definition Classes
    AnyRef → Any
  13. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  14. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  15. final def notify(): Unit
    Definition Classes
    AnyRef
  16. final def notifyAll(): Unit
    Definition Classes
    AnyRef
  17. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  18. def toString(): String
    Definition Classes
    AnyRef → Any
  19. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from SAMRecordFactory

Inherited from AnyRef

Inherited from Any

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