Packages

class SampleSheet extends Iterable[Sample]

Stores information about samples from an Illumina Experiment Manager Sample Sheet (typically a MiSeq). The samples may also include derived information.

Optional fields include support for specifying the expected sample barcode for each sample. The sample barcode can be present as a sub-sequence (or sub-sequences) in the i7 or i5 read. If additional bases are found in the i7 or i5 read, such as molecular barcodes, the should be included as Ns. It is up to the developer to obtain the correct read structure elsewhere to infer which bases are sample barcode and which bases are not (ex. molecular identifiers).

The sample identifier should be unique across samples within the sample sheet, and the combination of sample name and library identifier should also be unique across samples within the sample sheet.

Linear Supertypes
Iterable[Sample], IterableLike[Sample, Iterable[Sample]], Equals, GenIterable[Sample], GenIterableLike[Sample, Iterable[Sample]], Traversable[Sample], GenTraversable[Sample], GenericTraversableTemplate[Sample, Iterable], TraversableLike[Sample, Iterable[Sample]], GenTraversableLike[Sample, Iterable[Sample]], Parallelizable[Sample, ParIterable[Sample]], TraversableOnce[Sample], GenTraversableOnce[Sample], FilterMonadic[Sample, Iterable[Sample]], HasNewBuilder[Sample, Iterable[com.fulcrumgenomics.illumina.Sample] @scala.annotation.unchecked.uncheckedVariance], AnyRef, Any
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Inherited
  1. SampleSheet
  2. Iterable
  3. IterableLike
  4. Equals
  5. GenIterable
  6. GenIterableLike
  7. Traversable
  8. GenTraversable
  9. GenericTraversableTemplate
  10. TraversableLike
  11. GenTraversableLike
  12. Parallelizable
  13. TraversableOnce
  14. GenTraversableOnce
  15. FilterMonadic
  16. HasNewBuilder
  17. AnyRef
  18. Any
Implicitly
  1. by MonadOps
  2. by CollectionsHaveToParArray
  3. by any2stringadd
  4. by StringFormat
  5. by Ensuring
  6. by ArrowAssoc
  7. by alternateImplicit
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new SampleSheet(samples: Seq[Sample])

Type Members

  1. type Self = Iterable[Sample]
    Attributes
    protected[this]
    Definition Classes
    TraversableLike
  2. class WithFilter extends FilterMonadic[A, Repr]
    Definition Classes
    TraversableLike

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from SampleSheet to any2stringadd[SampleSheet] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ++[B >: Sample, That](that: GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[Sample], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  5. def ++:[B >: Sample, That](that: Traversable[B])(implicit bf: CanBuildFrom[Iterable[Sample], B, That]): That
    Definition Classes
    TraversableLike
  6. def ++:[B >: Sample, That](that: TraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[Sample], B, That]): That
    Definition Classes
    TraversableLike
  7. def ->[B](y: B): (SampleSheet, B)
    Implicit
    This member is added by an implicit conversion from SampleSheet to ArrowAssoc[SampleSheet] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()
  8. def /:[B](z: B)(op: (B, Sample) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  9. def :\[B](z: B)(op: (Sample, B) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  10. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  11. def addString(b: StringBuilder): StringBuilder
    Definition Classes
    TraversableOnce
  12. def addString(b: StringBuilder, sep: String): StringBuilder
    Definition Classes
    TraversableOnce
  13. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder
    Definition Classes
    TraversableOnce
  14. def aggregate[B](z: ⇒ B)(seqop: (B, Sample) ⇒ B, combop: (B, B) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  15. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  16. def canEqual(that: Any): Boolean
    Definition Classes
    IterableLike → Equals
  17. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  18. def collect[B, That](pf: PartialFunction[Sample, B])(implicit bf: CanBuildFrom[Iterable[Sample], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  19. def collectFirst[B](pf: PartialFunction[Sample, B]): Option[B]
    Definition Classes
    TraversableOnce
  20. def companion: GenericCompanion[Iterable]
    Definition Classes
    Iterable → GenIterable → Traversable → GenTraversable → GenericTraversableTemplate
  21. def copyToArray[B >: Sample](xs: Array[B], start: Int, len: Int): Unit
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  22. def copyToArray[B >: Sample](xs: Array[B]): Unit
    Definition Classes
    TraversableOnce → GenTraversableOnce
  23. def copyToArray[B >: Sample](xs: Array[B], start: Int): Unit
    Definition Classes
    TraversableOnce → GenTraversableOnce
  24. def copyToBuffer[B >: Sample](dest: Buffer[B]): Unit
    Definition Classes
    TraversableOnce
  25. def count(p: (Sample) ⇒ Boolean): Int
    Definition Classes
    TraversableOnce → GenTraversableOnce
  26. def drop(n: Int): Iterable[Sample]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  27. def dropRight(n: Int): Iterable[Sample]
    Definition Classes
    IterableLike
  28. def dropWhile(p: (Sample) ⇒ Boolean): Iterable[Sample]
    Definition Classes
    TraversableLike → GenTraversableLike
  29. def ensuring(cond: (SampleSheet) ⇒ Boolean, msg: ⇒ Any): SampleSheet
    Implicit
    This member is added by an implicit conversion from SampleSheet to Ensuring[SampleSheet] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  30. def ensuring(cond: (SampleSheet) ⇒ Boolean): SampleSheet
    Implicit
    This member is added by an implicit conversion from SampleSheet to Ensuring[SampleSheet] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  31. def ensuring(cond: Boolean, msg: ⇒ Any): SampleSheet
    Implicit
    This member is added by an implicit conversion from SampleSheet to Ensuring[SampleSheet] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  32. def ensuring(cond: Boolean): SampleSheet
    Implicit
    This member is added by an implicit conversion from SampleSheet to Ensuring[SampleSheet] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  33. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  34. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  35. def exists(p: (Sample) ⇒ Boolean): Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  36. def filter(p: (Sample) ⇒ Boolean): Iterable[Sample]
    Definition Classes
    TraversableLike → GenTraversableLike
  37. def filterNot(p: (Sample) ⇒ Boolean): Iterable[Sample]
    Definition Classes
    TraversableLike → GenTraversableLike
  38. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  39. def find(p: (Sample) ⇒ Boolean): Option[Sample]
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  40. def flatMap[B, That](f: (Sample) ⇒ GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[Sample], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  41. def flatten[B](implicit asTraversable: (Sample) ⇒ GenTraversableOnce[B]): Iterable[B]
    Definition Classes
    GenericTraversableTemplate
  42. def fold[A1 >: Sample](z: A1)(op: (A1, A1) ⇒ A1): A1
    Definition Classes
    TraversableOnce → GenTraversableOnce
  43. def foldLeft[B](z: B)(op: (B, Sample) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  44. def foldRight[B](z: B)(op: (Sample, B) ⇒ B): B
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  45. def forall(p: (Sample) ⇒ Boolean): Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  46. def foreach[U](f: (Sample) ⇒ U): Unit
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike → TraversableOnce → GenTraversableOnce → FilterMonadic
  47. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from SampleSheet to StringFormat[SampleSheet] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()
  48. def genericBuilder[B]: Builder[B, Iterable[B]]
    Definition Classes
    GenericTraversableTemplate
  49. def get(index: Int): Sample
  50. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
  51. def groupBy[K](f: (Sample) ⇒ K): Map[K, Iterable[Sample]]
    Definition Classes
    TraversableLike → GenTraversableLike
  52. def grouped(size: Int): Iterator[Iterable[Sample]]
    Definition Classes
    IterableLike
  53. def hasDefiniteSize: Boolean
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  54. def hashCode(): Int
    Definition Classes
    AnyRef → Any
  55. def head: Sample
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  56. def headOption: Option[Sample]
    Definition Classes
    TraversableLike → GenTraversableLike
  57. def init: Iterable[Sample]
    Definition Classes
    TraversableLike → GenTraversableLike
  58. def inits: Iterator[Iterable[Sample]]
    Definition Classes
    TraversableLike
  59. def isEmpty: Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  60. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  61. final def isTraversableAgain: Boolean
    Definition Classes
    TraversableLike → GenTraversableLike → GenTraversableOnce
  62. def iterator: Iterator[Sample]
    Definition Classes
    SampleSheet → IterableLike → GenIterableLike
  63. def last: Sample
    Definition Classes
    TraversableLike → GenTraversableLike
  64. def lastOption: Option[Sample]
    Definition Classes
    TraversableLike → GenTraversableLike
  65. def map[B, That](f: (Sample) ⇒ B)(implicit bf: CanBuildFrom[Iterable[Sample], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  66. def max[B >: Sample](implicit cmp: Ordering[B]): Sample
    Definition Classes
    TraversableOnce → GenTraversableOnce
  67. def maxBy[B](f: (Sample) ⇒ B)(implicit cmp: Ordering[B]): Sample
    Definition Classes
    TraversableOnce → GenTraversableOnce
  68. def min[B >: Sample](implicit cmp: Ordering[B]): Sample
    Definition Classes
    TraversableOnce → GenTraversableOnce
  69. def minBy[B](f: (Sample) ⇒ B)(implicit cmp: Ordering[B]): Sample
    Definition Classes
    TraversableOnce → GenTraversableOnce
  70. def mkString: String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  71. def mkString(sep: String): String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  72. def mkString(start: String, sep: String, end: String): String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  73. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  74. def newBuilder: Builder[Sample, Iterable[Sample]]
    Attributes
    protected[this]
    Definition Classes
    GenericTraversableTemplate → HasNewBuilder
  75. def nonEmpty: Boolean
    Definition Classes
    TraversableOnce → GenTraversableOnce
  76. final def notify(): Unit
    Definition Classes
    AnyRef
  77. final def notifyAll(): Unit
    Definition Classes
    AnyRef
  78. def par: ParIterable[Sample]
    Definition Classes
    Parallelizable
  79. def parCombiner: Combiner[Sample, ParIterable[Sample]]
    Attributes
    protected[this]
    Definition Classes
    TraversableLike → Parallelizable
  80. def partition(p: (Sample) ⇒ Boolean): (Iterable[Sample], Iterable[Sample])
    Definition Classes
    TraversableLike → GenTraversableLike
  81. def product[B >: Sample](implicit num: Numeric[B]): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  82. def reduce[A1 >: Sample](op: (A1, A1) ⇒ A1): A1
    Definition Classes
    TraversableOnce → GenTraversableOnce
  83. def reduceLeft[B >: Sample](op: (B, Sample) ⇒ B): B
    Definition Classes
    TraversableOnce
  84. def reduceLeftOption[B >: Sample](op: (B, Sample) ⇒ B): Option[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  85. def reduceOption[A1 >: Sample](op: (A1, A1) ⇒ A1): Option[A1]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  86. def reduceRight[B >: Sample](op: (Sample, B) ⇒ B): B
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  87. def reduceRightOption[B >: Sample](op: (Sample, B) ⇒ B): Option[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  88. def repr: Iterable[Sample]
    Definition Classes
    TraversableLike → GenTraversableLike
  89. def reversed: List[Sample]
    Attributes
    protected[this]
    Definition Classes
    TraversableOnce
  90. def sameElements[B >: Sample](that: GenIterable[B]): Boolean
    Definition Classes
    IterableLike → GenIterableLike
  91. def scan[B >: Sample, That](z: B)(op: (B, B) ⇒ B)(implicit cbf: CanBuildFrom[Iterable[Sample], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  92. def scanLeft[B, That](z: B)(op: (B, Sample) ⇒ B)(implicit bf: CanBuildFrom[Iterable[Sample], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  93. def scanRight[B, That](z: B)(op: (Sample, B) ⇒ B)(implicit bf: CanBuildFrom[Iterable[Sample], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) The behavior of scanRight has changed. The previous behavior can be reproduced with scanRight.reverse.

  94. def seq: Iterable[Sample]
    Definition Classes
    Iterable → GenIterable → Traversable → GenTraversable → Parallelizable → TraversableOnce → GenTraversableOnce
  95. def size: Int
    Definition Classes
    SampleSheet → GenTraversableLike → TraversableOnce → GenTraversableOnce
  96. def sizeHintIfCheap: Int
    Attributes
    protected[scala.collection]
    Definition Classes
    GenTraversableOnce
  97. def slice(from: Int, until: Int): Iterable[Sample]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  98. def sliding(size: Int, step: Int): Iterator[Iterable[Sample]]
    Definition Classes
    IterableLike
  99. def sliding(size: Int): Iterator[Iterable[Sample]]
    Definition Classes
    IterableLike
  100. def span(p: (Sample) ⇒ Boolean): (Iterable[Sample], Iterable[Sample])
    Definition Classes
    TraversableLike → GenTraversableLike
  101. def splitAt(n: Int): (Iterable[Sample], Iterable[Sample])
    Definition Classes
    TraversableLike → GenTraversableLike
  102. def stringPrefix: String
    Definition Classes
    TraversableLike → GenTraversableLike
  103. def sum[B >: Sample](implicit num: Numeric[B]): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  104. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  105. def tail: Iterable[Sample]
    Definition Classes
    TraversableLike → GenTraversableLike
  106. def tails: Iterator[Iterable[Sample]]
    Definition Classes
    TraversableLike
  107. def take(n: Int): Iterable[Sample]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  108. def takeRight(n: Int): Iterable[Sample]
    Definition Classes
    IterableLike
  109. def takeWhile(p: (Sample) ⇒ Boolean): Iterable[Sample]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  110. def thisCollection: Iterable[Sample]
    Attributes
    protected[this]
    Definition Classes
    IterableLike → TraversableLike
  111. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, Sample, Col[Sample]]): Col[Sample]
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  112. def toArray[B >: Sample](implicit arg0: ClassTag[B]): Array[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  113. def toBuffer[B >: Sample]: Buffer[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  114. def toCollection(repr: Iterable[Sample]): Iterable[Sample]
    Attributes
    protected[this]
    Definition Classes
    IterableLike → TraversableLike
  115. def toIndexedSeq: IndexedSeq[Sample]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  116. def toIterable: Iterable[Sample]
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  117. def toIterator: Iterator[Sample]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  118. def toList: List[Sample]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  119. def toMap[T, U](implicit ev: <:<[Sample, (T, U)]): Map[T, U]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  120. def toParArray: ParArray[T]
    Implicit
    This member is added by an implicit conversion from SampleSheet to CollectionsHaveToParArray[SampleSheet, T] performed by method CollectionsHaveToParArray in scala.collection.parallel. This conversion will take place only if an implicit value of type (SampleSheet) ⇒ GenTraversableOnce[T] is in scope.
    Definition Classes
    CollectionsHaveToParArray
  121. def toSeq: Seq[Sample]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  122. def toSet[B >: Sample]: Set[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  123. def toStream: Stream[Sample]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
  124. def toString(): String
    Definition Classes
    TraversableLike → Any
  125. def toTraversable: Traversable[Sample]
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  126. def toVector: Vector[Sample]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  127. def transpose[B](implicit asTraversable: (Sample) ⇒ GenTraversableOnce[B]): Iterable[Iterable[B]]
    Definition Classes
    GenericTraversableTemplate
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) transpose throws an IllegalArgumentException if collections are not uniformly sized.

  128. def unzip[A1, A2](implicit asPair: (Sample) ⇒ (A1, A2)): (Iterable[A1], Iterable[A2])
    Definition Classes
    GenericTraversableTemplate
  129. def unzip3[A1, A2, A3](implicit asTriple: (Sample) ⇒ (A1, A2, A3)): (Iterable[A1], Iterable[A2], Iterable[A3])
    Definition Classes
    GenericTraversableTemplate
  130. def view(from: Int, until: Int): IterableView[Sample, Iterable[Sample]]
    Definition Classes
    IterableLike → TraversableLike
  131. def view: IterableView[Sample, Iterable[Sample]]
    Definition Classes
    IterableLike → TraversableLike
  132. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  133. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  134. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  135. def withFilter(p: (Sample) ⇒ Boolean): FilterMonadic[Sample, Iterable[Sample]]
    Definition Classes
    TraversableLike → FilterMonadic
  136. def zip[A1 >: Sample, B, That](that: GenIterable[B])(implicit bf: CanBuildFrom[Iterable[Sample], (A1, B), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  137. def zipAll[B, A1 >: Sample, That](that: GenIterable[B], thisElem: A1, thatElem: B)(implicit bf: CanBuildFrom[Iterable[Sample], (A1, B), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  138. def zipWithIndex[A1 >: Sample, That](implicit bf: CanBuildFrom[Iterable[Sample], (A1, Int), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  139. def →[B](y: B): (SampleSheet, B)
    Implicit
    This member is added by an implicit conversion from SampleSheet to ArrowAssoc[SampleSheet] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Shadowed Implicit Value Members

  1. def filter(p: (Sample) ⇒ Boolean): TraversableOnce[Sample]
    Implicit
    This member is added by an implicit conversion from SampleSheet to MonadOps[Sample] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (sampleSheet: MonadOps[Sample]).filter(p)
    Definition Classes
    MonadOps
  2. def flatMap[B](f: (Sample) ⇒ GenTraversableOnce[B]): TraversableOnce[B]
    Implicit
    This member is added by an implicit conversion from SampleSheet to MonadOps[Sample] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (sampleSheet: MonadOps[Sample]).flatMap(f)
    Definition Classes
    MonadOps
  3. def map[B](f: (Sample) ⇒ B): TraversableOnce[B]
    Implicit
    This member is added by an implicit conversion from SampleSheet to MonadOps[Sample] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (sampleSheet: MonadOps[Sample]).map(f)
    Definition Classes
    MonadOps
  4. def withFilter(p: (Sample) ⇒ Boolean): Iterator[Sample]
    Implicit
    This member is added by an implicit conversion from SampleSheet to MonadOps[Sample] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (sampleSheet: MonadOps[Sample]).withFilter(p)
    Definition Classes
    MonadOps

Inherited from Iterable[Sample]

Inherited from IterableLike[Sample, Iterable[Sample]]

Inherited from Equals

Inherited from GenIterable[Sample]

Inherited from GenIterableLike[Sample, Iterable[Sample]]

Inherited from Traversable[Sample]

Inherited from GenTraversable[Sample]

Inherited from GenericTraversableTemplate[Sample, Iterable]

Inherited from TraversableLike[Sample, Iterable[Sample]]

Inherited from GenTraversableLike[Sample, Iterable[Sample]]

Inherited from Parallelizable[Sample, ParIterable[Sample]]

Inherited from TraversableOnce[Sample]

Inherited from GenTraversableOnce[Sample]

Inherited from FilterMonadic[Sample, Iterable[Sample]]

Inherited from HasNewBuilder[Sample, Iterable[com.fulcrumgenomics.illumina.Sample] @scala.annotation.unchecked.uncheckedVariance]

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion MonadOps from SampleSheet to MonadOps[Sample]

Inherited by implicit conversion CollectionsHaveToParArray from SampleSheet to CollectionsHaveToParArray[SampleSheet, T]

Inherited by implicit conversion any2stringadd from SampleSheet to any2stringadd[SampleSheet]

Inherited by implicit conversion StringFormat from SampleSheet to StringFormat[SampleSheet]

Inherited by implicit conversion Ensuring from SampleSheet to Ensuring[SampleSheet]

Inherited by implicit conversion ArrowAssoc from SampleSheet to ArrowAssoc[SampleSheet]

Inherited by implicit conversion alternateImplicit from SampleSheet to ForceImplicitAmbiguity

Ungrouped